Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028825.1 Length=87372 Score E Sequences producing significant alignments: (Bits) Value seq1544 82.4 4e-11 >seq1544 Length=2721 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 86300 GGGCTTATTTATGGCGACTCTATCACGTTGGAACGTGCAAACGAAATACTGAAGCGTTTG 86359 || || ||||| || || ||||| ||||||||||| | |||| ||| | ||| || Sbjct 888 GGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTCTG 829 Query 86360 TATGAAATGGGTTTTGCAA-GCTC-TAACGTAGTGTTTGGTGTAGGTTCTTACACTTACC 86417 || | ||| || || ||| |||| | ||||| |||||||| || ||||| |||| Sbjct 828 ATGGATAAGGGCTT--CAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTACC 771 Query 86418 AGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCAAC 86460 ||||||| ||||||||||| || | | ||| |||| || || Sbjct 770 AGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 279442190651349