Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028872.1 Length=86252 Score E Sequences producing significant alignments: (Bits) Value seq1544 104 1e-17 >seq1544 Length=2721 Score = 104 bits (114), Expect = 1e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 85278 TCGGACTTATCTATGGTGACTCTATCACGCTGGAACGTGCAAACGAAATCCTGAAGCGTC 85337 |||| || || || ||||| ||||| |||||||||||| | |||||||| | |||| Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831 Query 85338 TGTATGAAATGGGTTTTGCAA-GCTC-TAACGTAGTGTTTGGTGTAGGCTCTTACACTTA 85395 || || | ||| || || ||| |||| | ||||| ||||||||||| ||||| || Sbjct 830 TGATGGATAAGGGCTT--CAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTA 773 Query 85396 CCAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCAAC 85440 ||||||||| ||||||||||| || | | ||| |||| || || Sbjct 772 CCAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275858490863989