Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq1860 86.0 5e-12 >seq1860 Length=1884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 48293 TACGCCATAACCCTTACACCACTCAGGCTCACCTAGCTCCTTGGCCATCCACTCTGACGC 48352 ||| |||||||| || |||||||||||||| || || || || |||| |||| ||||| Sbjct 1219 TACACCATAACCTTTGCACCACTCAGGCTCTCCCAGTTCTTTAGCCAGCCACCTCGACGC 1160 Query 48353 CCTCAAAGACTCCTTATTCAGGTGCTCGAAGATTTCTAGGTTCTTCATATGTGCTTCGAA 48412 || ||||| || |||| |||| ||| | || | |||| ||| || || || | Sbjct 1159 ATCCATAGACTGCTCTTTCATCTGCTTGAACACTTTGATGTTCCACATTTGAGCATCAAT 1100 Query 48413 AGACTCGAAAGCAATCATATTATCTTGTAGATAAGTATGGTATCC 48457 |||| | | |||||| | ||||||||| ||||| ||||| Sbjct 1099 GCTCTCGTACGGAATCATGTGGGATTGTAGATAGGTATGATATCC 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371485680011347