Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028935.1 Length=88698 Score E Sequences producing significant alignments: (Bits) Value seq1544 84.2 1e-11 >seq1544 Length=2721 Score = 84.2 bits (92), Expect = 1e-11 Identities = 166/242 (69%), Gaps = 13/242 (5%) Strand=Plus/Minus Query 18079 GGCTTAATCTACGGTGATTCTATCACTCTGGAACGTGCTGAAGAGATTCTTAGTCGTCTT 18138 ||| | || ||||||||| ||||||||||||||||| ||| | || || ||||| Sbjct 888 GGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTCTG 829 Query 18139 GCTGAAAAGGGCTT---TGCAAGTTCTAACGTTGTTTTTGGTGTTGGTTCATACACTTAC 18195 || |||||||| ||| | |||| | || || ||||| || || ||||| ||| Sbjct 828 ATGGATAAGGGCTTCAGTGC---TGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTAC 772 Query 18196 CAGTACCTGACTCGTGATACCTTTGCATTCGCTGTCAAAGCAACTCTTGCACAGATAGAT 18255 |||||| | |||||||| || || | | ||| |||| || || | | |||| | | Sbjct 771 CAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC-GTGGGACAGGTGAAC 713 Query 18256 GGGGAAG---AAATCATGCTGGCAAAAGACCCTAAAACTGATAGTGGTCTGAAGAAGTCT 18312 || |||| | ||| | | |||||||| || || | ||| ||||||||||| Sbjct 712 GGTGAAGGTCGTAACATCCAG---AAAGACCCGAAGACCGGCGACGGTATGAAGAAGTCT 656 Query 18313 GC 18314 || Sbjct 655 GC 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 283685035221027