Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_029023.1 Length=87712 Score E Sequences producing significant alignments: (Bits) Value seq1544 82.4 4e-11 >seq1544 Length=2721 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 13524 GTTGCTTTGACAGCAAATGCAAAGGTGTCACGAGTCATATACTGGTAAGTGTAAGAGCCT 13583 || || |||| ||| | | || ||||||||||| || |||||||| ||||| |||||| Sbjct 728 GTAGCCTTGATAGCCATGCCGAACGTGTCACGAGTGATGTACTGGTAGGTGTACGAGCCT 787 Query 13584 ACACCAAATACTACGTTA-GAGC-TTGCAAAACCCATTTCATACAAACGCTTCAGGATTT 13641 ||||| || || | |||| ||| || || ||| | || || ||| | |||||||| Sbjct 788 ACACCGAACACGATGTTACCAGCACTG--AAGCCCTTATCCATCAGACGTTGCAGGATTT 845 Query 13642 CGTTTGCACGTTCCAACGTGATAGAGTCACCATAGATAAGTCC 13684 | ||||||||||| ||||| ||||| || || || || Sbjct 846 GTTCTGCACGTTCCAGAGTGATGCTATCACCGTAAATCAGGCC 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 280530099515369