Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_029065.1 Length=98765 Score E Sequences producing significant alignments: (Bits) Value seq1920 82.4 5e-11 >seq1920 Length=1769 Score = 82.4 bits (90), Expect = 5e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35156 CTTCGGCAGAGCCTTA-CAGACCAGCTCAGTAGCCTTACGTCCAGCTTCGTCGTTGTCCA 35214 |||||||||| ||||| || | | || | ||||| ||||| | |||||||||| Sbjct 1697 CTTCGGCAGAACCTTAGCAATCTTGTGCA-TCGCCTTCTCACCAGCAGCATCGTTGTCCA 1639 Query 35215 TACACACGATGATGCGTTCGAAGCGGTTGAACCACTCGTATTGCATCACAATCTGCTTCT 35274 | | | |||||| ||||| |||||||||||||| || |||||||||| Sbjct 1638 TGCCGATGATGATCTTATCGAACGTATTGAACCACTCGTACTGTGCTTGAATCTGCTTCA 1579 Query 35275 CACAACCTGTCTCACCAATGGTTGGCGACACAACTGGAGTCGGATCATA 35323 |||| |||||||| |||| ||| || || ||||| || | ||||| || Sbjct 1578 CACAGCCTGTCTCTCCAACGGTAGGAGATACAACCGGGATTGGATCGTA 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 315896736791878