Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq93 154 3e-32 seq1557 149 1e-30 seq2872 147 5e-30 seq839 111 4e-19 seq1709 109 1e-18 seq210 91.5 3e-13 seq1893 89.7 1e-12 seq1012 87.8 4e-12 seq593 86.0 1e-11 seq2230 84.2 5e-11 >seq93 Length=214751 Score = 154 bits (170), Expect = 3e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||||||||| || || ||||| || || || | || | |||||| Sbjct 184804 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 184863 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| || ||||| || ||||| || ||||| || | || ||||||||| Sbjct 184864 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 184923 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || | ||||| || ||||| ||||| | ||||||||| Sbjct 184924 TGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTT 184983 Query 211083 TTT-CCCGTGAGAGTCTTTAC-AAACACCTGCAT 211114 ||| || || || ||||| || ||| | ||||| Sbjct 184984 TTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq1557 Length=337913 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||||||||| || || ||||| || || || | || | |||||| Sbjct 14378 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 14319 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| || ||||| || ||||| || ||||| || | || ||||||||| Sbjct 14318 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 14259 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || | ||||| || || || || || | ||||||||| Sbjct 14258 TGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTT 14199 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 14198 TTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||||||||| || || ||||| || || || | || | |||||||| ||||| Sbjct 1924 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 1865 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| || ||||| || ||||| || ||||| || | || ||||||||||||||||| Sbjct 1864 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1805 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| || | ||||| || || || ||||| | ||||||||| || || || Sbjct 1804 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGT 1745 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| Sbjct 1744 CAGTGTCTTCACGAAAATTTGCAT 1721 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||||||||| || || ||||| || || || | || | |||||| Sbjct 2897 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 2838 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| || ||||| || ||||| || ||||| || | || ||||||||| Sbjct 2837 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 2778 Query 211023 TGGATCTT 211030 |||||||| Sbjct 2777 TGGATCTT 2770 >seq839 Length=159509 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || || || || ||||| |||| || ||||||||||||||||| | Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| ||||||||||| | || ||||| |||||||| ||||| || ||||| Sbjct 77909 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGC 77968 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 77969 GTCTTGACGAAAATTTGCATT 77989 >seq1709 Length=109515 Score = 109 bits (120), Expect = 1e-18 Identities = 110/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | || || || || || || | || |||||||||||||||||| Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 211035 TTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||||||||||||||||||| || ||||||||| |||||||| || ||||| ||||| Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 211094 AGTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 13841 CGTCTTGACGAAAATTTGCATT 13862 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | || || || || || || | || |||||||||||||||||| Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||||||||||||||| | |||||||| |||||||| || || || || || Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 18111 GTCTTCACGAAAATTTGCAT 18092 >seq210 Length=19051 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | || || || || || || | || || ||||||||||||||| Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||||||||||||||| | |||||||| | |||||| ||||| || || || Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 8915 GTCTTCACGAAAATTTGCAT 8896 >seq1893 Length=1815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||||||| |||||||||||||||||||| | |||||||| Sbjct 567 CCCTCCTTGTCCTGGATCTTTGCCTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCC 626 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || || || || ||||| || || | ||||| Sbjct 627 AGAGTGATGGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCAT 670 >seq1012 Length=142389 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 210919 TGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTG 210978 ||||||||||| ||||||| || || | | || | || || || || || || Sbjct 141418 TGGACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGT 141477 Query 210979 CGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCA 211038 ||||||| || |||||||| || | |||| ||||| || | ||||||||| |||| Sbjct 141478 CGAAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCA 141537 Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||| ||||||||||| | |||||||| | |||||| || Sbjct 141538 CGTTCTCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGT 141580 >seq593 Length=9788 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || |||||||||||||| || || ||||| || || | | | || ||||| ||| Sbjct 7142 AGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGTCAAAGCAAGACCGTCTTCGAGC 7083 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 || || || || ||||| | | || || |||| |||| | ||||||||||||||| Sbjct 7082 TGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGGAATGCGCTCCTTGTCCTGGATC 7023 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||| ||||| |||| ||||||||| ||| Sbjct 7022 TTTGCCTTCACTTTTTGGATGGTGTCGGAG 6993 >seq2230 Length=76435 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 || |||||||||||||||||||||||||| || ||||| |||| ||| | || | |||| Sbjct 11918 CCGAAGAAGCACGGAAGAGGAGGACAATCAGCGCTGCGCTTTGCAAGGTTGCGCATGGAA 11859 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGA 139903 ||| |||| || || | || ||||| || |||| Sbjct 11858 AAGCGGCATAATTATGTAAGGAAAGTAGCGGAGA 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159049924712645