Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1557 86.0 5e-12 >seq1557 Length=337913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || ||||| | || || | || || Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || || ||||| || | || | || ||| |||||| | Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || ||| || | ||| | | || || || ||| |||||| |||| ||||| | Sbjct 14255 ATCTTC-GTCTTCACGTTGTCAACTGTGTC---CGAACTCTCCACATCCAAAGTGATCGT 14200 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || ||||| || || || || |||||||| Sbjct 14199 TTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429509619247049