Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2872 107 1e-18 seq1557 107 1e-18 seq93 98.7 7e-16 >seq2872 Length=49360 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || |||||||||||| | || || || || Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| || | || || || | | ||||| || || | ||||| ||||| Sbjct 1781 GACACAGTTGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||||||||| || ||||| | ||||| | | ||| ||||| Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1900 CATTCAGAAGGAGTCCAC 1917 >seq1557 Length=337913 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || |||||||||||| | || || || || Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| || | || || || | | ||||| || || | ||||| ||||| Sbjct 14227 GACACAGTTGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||||||||| || ||||| | ||||| | | ||| ||||| Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 14346 CATTCAGAAGGAGTCCAC 14363 >seq93 Length=214751 Score = 98.7 bits (108), Expect = 7e-16 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTT-CGTTAAAACCCTCACGGG-AAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||| ||||| ||| || || || || || ||||||||||||| | || || || Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| ||||| || | || || || | | ||||| || || | ||||| ||| Sbjct 184957 CGGACACAGTTGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGAT 184899 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || |||||||||||||| || ||||| | ||||| | | ||| ||| Sbjct 184898 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 184839 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 184838 AACATTCAGAAGGAGTCCAC 184819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337981286731484