Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq820 118 3e-21 seq101 107 5e-18 seq1010 105 2e-17 seq962 104 6e-17 seq2000 100 7e-16 seq6253 98.7 2e-15 seq1561 98.7 2e-15 seq6190 89.7 1e-12 seq2403 89.7 1e-12 seq4751 87.8 4e-12 seq1012 87.8 4e-12 seq949 87.8 4e-12 seq5356 86.0 1e-11 seq1489 86.0 1e-11 seq210 86.0 1e-11 seq6110 84.2 5e-11 >seq820 Length=160256 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || ||||| | ||||| || |||||||| | ||| || ||||| || || || ||| Sbjct 13159 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCGGTCATTATCGAGCTGTTTGCCCGCAAAG 13100 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || ||||||||| | | || || |||||| |||| |||| ||| || |||| Sbjct 13099 ATCAGCCGTTGTTGGCCAGTTGGGATGCCTTCCGTGTCCTGGACCTTCTGTTTCAGGTTG 13040 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 | ||||||||| ||| | ||||| || || | || | || |||||||||||||| | | Sbjct 13039 TTGATGGTGTCCGAGCTGTCCACCTCCAATGCCATGGCTTTTCCCGTCAAAGTTTTCACG 12980 Query 225703 AACACTTGCATTTTATGG 225720 || ||||||||| |||| Sbjct 12979 AAAACTTGCATTCCATGG 12962 >seq101 Length=23353 Score = 107 bits (118), Expect = 5e-18 Identities = 197/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || || ||||||||||| | | || ||||| ||||| |||||| ||||| || | Sbjct 5444 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 5502 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 || || | ||| |||| || || || |||| ||| | | ||||| ||| | | Sbjct 5503 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 5558 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| | | ||||| || || || | | ||||| ||||| | |||||||| | Sbjct 5559 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCCGCAT 5618 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| | Sbjct 5619 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCAT 5678 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| |||||| |||| ||| Sbjct 5679 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 5719 >seq1010 Length=5412 Score = 105 bits (116), Expect = 2e-17 Identities = 107/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || | ||||||| |||| ||||| || ||||||||||||| |||||||||| Sbjct 4672 ATGTCAAGAGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 4731 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || ||||||||||||| |||||| |||| | | |||| ||| Sbjct 4732 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGA 4791 Query 7845 ATATTT-ACGCGTTAGCT 7861 || ||| | ||||||||| Sbjct 4792 ATGTTTAATGCGTTAGCT 4809 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 5347 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 5289 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 5288 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 5236 >seq962 Length=5977 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 5011 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 4953 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 4952 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 4900 >seq2000 Length=1661 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 1313 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 1372 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||| | |||||| |||| | | |||| || | || ||||| Sbjct 1373 CGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGCGAACTTAACGCG 1432 Query 7856 TTAGCTT 7862 ||||||| Sbjct 1433 TTAGCTT 1439 >seq6253 Length=1059 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || | ||| |||||| || || ||||| ||| ||||||||||||| ||||||||| Sbjct 548 ATGTCAAAGGTGGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATCATCCACCGCT 607 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || |||||||||| |||||||||| |||| | | |||| || Sbjct 608 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGT 667 Query 7844 AATATTTACGCGTTAGCTT 7862 | || |||||||||||| Sbjct 668 CAACTTCACGCGTTAGCTT 686 >seq1561 Length=118522 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 |||||| |||||||||||||| || ||||| ||||| |||| ||||| || ||||| Sbjct 86475 GACAAGATGGAGAGTGGATTCCTTCTGGACGTTGTAGTCGGTCAAAGCGTGGCCGTCTTC 86534 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||| || || ||||||| || ||||| || || | |||||| || |||||||| Sbjct 86535 GAGCTGTTTTCCGACGAAGATCAGACGTTGCTGATCAGACGGAATGCCCTCCTTGTC 86591 >seq6190 Length=1069 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 222 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 164 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 163 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 124 >seq2403 Length=69003 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || || |||||||| ||||| ||||| || |||||| |||||| |||| | || Sbjct 3561 TATGTCAAGCCTTGGTAAGGTTCTTCGCGTTGCGTCGAATTAAGCCACATGCTCCGCTGC 3502 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | |||||| || |||||||||||| |||||||| |||| | | |||| || Sbjct 3501 TTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGG 3442 Query 7844 AATA-TTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 3441 GGCACTTAATGCGTTAGCT 3423 >seq4751 Length=1496 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 |||||||||||||||||||| || ||||||||||||| | |||| ||||| || Sbjct 674 TCAGGATGACCAAAAAATCAAAACAAATGTTGATAAATTAACGGATTACCTCCTGTCGAA 615 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||| ||||| | |||||||| Sbjct 614 GGATCAAAAAATGAAGTATTTAAATTACGGTCAGTTAA 577 >seq1012 Length=142389 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 225518 TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAG 225577 |||| |||||| ||| ||||| |||| ||| |||| || || ||| || || || Sbjct 141418 TGGACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGT 141477 Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637 ||||||| || |||||||| || | ||||| ||||| || | |||||||| ||||| Sbjct 141478 CGAAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCA 141537 Query 225638 CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | ||||||||||| || || || || || ||||| || Sbjct 141538 CGTTCTCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGT 141580 >seq949 Length=6172 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 5354 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGACCCC 5413 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||| | | |||| | |||| | | |||||||| || ||| ||| Sbjct 5414 CGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGATTACTTATCGCT 5473 Query 7856 TTAGCTTA 7863 | ||||| Sbjct 5474 TGCGCTTA 5481 >seq5356 Length=1236 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| ||||||||||| ||| || |||| | Sbjct 369 GGTGGCACAGACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGC 310 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||||||||| Sbjct 309 AAGACGACGTATAGGGTCTGAC 288 >seq1489 Length=2939 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| |||||| || ||| |||| |||||| | | | | Sbjct 744 GGTAAGGTTCTTCGCGTTGCATCGAATTAATCCGCATGCTCCGCCGCTTGTGCGGGCCCC 685 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 ||||| || |||||||||||| |||||||| |||| | | |||| || Sbjct 684 CGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGG 638 >seq210 Length=19051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| | || || || || ||||| || || || ||||| ||||||||| | Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||||||||| || || || || || ||||| |||||||| || | Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 8915 GTCTTCACGAAAATTTGCAT 8896 >seq6110 Length=1082 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||| || || ||| | ||||| Sbjct 537 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCC-AGACTCCTACGGGAGGCAG 479 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 |||| | |||| || |||||||||||||| ||| Sbjct 478 CAGTAGGGAATCTTGCGCAATGGGCGAAAGCCTGA 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192426185329862