Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq1544 102 5e-17 >seq1544 Length=2721 Score = 102 bits (112), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 64850 AACGTCGTGTTCGGTGTCGGTTCATACACCTACCAGTACAACACCCGAGACACATTCGGT 64909 ||| ||||||||||||| || || |||||||||||||||| ||| || ||||| ||||| Sbjct 804 AACATCGTGTTCGGTGTAGGCTCGTACACCTACCAGTACATCACTCGTGACACGTTCGGC 745 Query 64910 TCGGCCATGAAGGCCACCTGGGCCGAGGTCGACGGCAAGGGTGTCAACCTGCTCAAGGAC 64969 ||| || ||||| || |||| | |||| |||| | ||| ||| | | || ||| Sbjct 744 ATGGCTATCAAGGCTACGTGGGAC-AGGTGAACGGTGAAGGTCGTAACATCCAGAAAGAC 686 Query 64970 CCGGTCACCGACGACGGGACGAAGAGGTCGGCTACGGG 65007 ||| |||| |||||| | ||||| ||| || || || Sbjct 685 CCGAAGACCGGCGACGGTATGAAGAAGTCTGCAACTGG 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299296527419714