Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_030934.1 Length=90552 Score E Sequences producing significant alignments: (Bits) Value seq1920 95.1 7e-15 >seq1920 Length=1769 Score = 95.1 bits (104), Expect = 7e-15 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 55596 TCCGCCTACCAGATGCTCGCAGACTACCAGAAAGGTAAAGGCTATGAAGCTTTCCCTGTC 55655 || || ||||||||||| ||||| || ||| ||||| || | |||| || Sbjct 1488 TCGGCTTACCAGATGCTTGCAGAGTATCAGGCGTCCCGTGGCTACGATCCAATCCCGGTT 1547 Query 55656 GTATCACCAACCATCGGTGAGACTGGCTGTGAGAAACAGATTGTAGGCCAGTACGAGTGG 55715 ||||| || ||| | || ||||| ||||||| ||| |||||| || |||||||||||| Sbjct 1548 GTATCTCCTACCGTTGGAGAGACAGGCTGTGTGAAGCAGATTCAAGCACAGTACGAGTGG 1607 Query 55716 TTTAACCGATTCGAGCGTATTATCGTCTGTATGGACAACGACGCAGCGGGTAGAGAAGCT 55775 || || ||||| || ||| || | ||||||||||| || || ||| |||||| Sbjct 1608 TTCAATACGTTCGATAAGATCATCATCGGCATGGACAACGATGCTGCTGGT-GAGAAGGC 1666 Query 55776 TCTGAGAAAGTTTGC-AAGGCATTGCCTAAGGGTAAAGCTTTCATTATGGAAATGG-GCT 55833 || ||| |||| |||| |||| ||| ||||| | | || || ||| || Sbjct 1667 GATGCACAAGATTGCTAAGGTTCTGCCGAAGAATAAAG-TGTACGTAGCCAAGTGGAGCA 1725 Query 55834 TGAAAGACCCTAA 55846 |||||||||||| Sbjct 1726 AGAAAGACCCTAA 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 289617338261889