Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq1544 120 2e-22 >seq1544 Length=2721 Score = 120 bits (132), Expect = 2e-22 Identities = 116/145 (80%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 3561 AACGTCGTTTTCGGCGTCGGCTCGTACACGTACCAGTACAACACCCGGGACACGTTCGGC 3620 ||| |||| ||||| || ||||||||||| |||||||||| ||| || |||||||||||| Sbjct 804 AACATCGTGTTCGGTGTAGGCTCGTACACCTACCAGTACATCACTCGTGACACGTTCGGC 745 Query 3621 AGCGCCATGAAGGCCACGTGGGCCGAGGTGGACGGTG-AGGGCGTGAACCTGCTCAAGGA 3679 | || || ||||| ||||||| | ||||| |||||| ||| ||| ||| | | || || Sbjct 744 ATGGCTATCAAGGCTACGTGGGAC-AGGTGAACGGTGAAGGTCGT-AACATCCAGAAAGA 687 Query 3680 CCCGATCACCGACGACGGAACGAAG 3704 ||||| |||| |||||| | |||| Sbjct 686 CCCGAAGACCGGCGACGGTATGAAG 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296106394662573