Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_031274.1 Length=50509 Score E Sequences producing significant alignments: (Bits) Value seq1860 104 8e-18 >seq1860 Length=1884 Score = 104 bits (114), Expect = 8e-18 Identities = 401/617 (65%), Gaps = 21/617 (3%) Strand=Plus/Minus Query 22462 ACACCATAACCTTTACACCACTCAGGTTCACCCCAAGCTTTCGCCATCCACTTCGTAGCA 22521 |||||||||||||| ||||||||||| || ||| |||| |||| |||| ||| ||| Sbjct 1218 ACACCATAACCTTTGCACCACTCAGGCTCTCCCAGTTCTTTAGCCAGCCACCTCGACGCA 1159 Query 22522 CGAGTAGCTTCCTCATGTAGATGTTGGAAGATTTCCAAGTTGACCATGTGAGCCTCGAAA 22581 ||| | ||| | | || | ||| | || | ||| ||| ||||| || | Sbjct 1158 TCCATAGACTGCTCTTTCATCTGCTTGAACACTTTGATGTTCCACATTTGAGCATCAATG 1099 Query 22582 GACTCAATAGGAATTAGTTTAGTTTGCAGGTAGGTGTGGAAACCGAGGGTTCCAAGCCCA 22641 ||| ||||| | | | ||| || ||||| || | || || || || ||| Sbjct 1098 CTCTCGTACGGAATCATGTGGGATTGTAGATAGGTATGATATCCACCGGCCCCTAGTCCA 1039 Query 22642 AGAGCCCTGCTTGCCTCAGT-GAATCTAACACTCTTTTCAAAACCCT---TTTGTCCCTT 22697 | ||| | | || ||||| | | ||| || || || | ||| | || ||| Sbjct 1038 ATAGCACGTCCAGCTTCAGTTGCAGCTACAGCT-TTCTCCAGCCCCGGAATCTG---CTT 983 Query 22698 GGCGAGTTCGATAAACTCTTGTGCAACGCAGTCAAGAAACACTGTAGACACGAACACTGC 22757 || ||||||| ||||| ||||||| ||||| ||||| |||| ||| ||||||| Sbjct 982 TGCTTGTTCGATGAACTCAGACACAACGCAATCAAGGAACACAGTAGCAACGTACACTGC 923 Query 22758 ATCTGTGTTTTTCCACTCATCATACTTCTCCAAATTCATGGACGACAGAACACAAGTGAA 22817 ||| |||| |||||||||||| ||||| || ||||| | | || |||||||| | Sbjct 922 ATCAGTGTCTTTCCACTCATCCCACTTCGACATGTTCATCCAAGCAAGCACACAAGTATA 863 Query 22818 --TGTA-TGGTCTGCGTCACTAAACAATGTAATCTCAGTGCAAAGGTTAGAGGCTTTAAC 22874 |||| | | |||| || || || || || |||||||| | || || || || Sbjct 862 GGTGTATTTGGCTGCATCGCTGTGCAGGAAGATTTCGGTGCAAAGCTGCGATGCCTTCAC 803 Query 22875 TTCAAGACCTCTGTCCTTATACATCTGAGG--GTTCATGGCGTTAACTGTATCAGGCTTA 22932 || || ||||| ||||||| ||| | | | | ||| ||| | || | | | Sbjct 802 CATCAGTCCCAAATCCTTGTACATCTCAGGACGATTACG--GTTCACTTTGTC--GATGA 747 Query 22933 --AAGAAATAGCCCTTACCAGTGATGGCCTTAACATACATTGCCCTTTGGAAGCG-TTGT 22989 ||||| ||||| |||||||| | ||| ||| ||| || | || ||| || |||| Sbjct 746 AGAAGAAGTAGCCTTTACCAGTTACCATCTTCACACGCATAGCTCGTTTGAACCGTTTGT 687 Query 22990 ACAGCGTCTGTGTCGCCAGCTTCTAGACGGTTGATGAAGTCTTGACTGATGTTCCAACCA 23049 | || || ||| ||||| | || | | ||| || | | ||| |||| || Sbjct 686 GC-GCTTCCTTGTTACCAGCGTTAAGCTTGGCAACGAATTCGTCATCAATGATCCAGCCC 628 Query 23050 ATGTTTAGATCATCAGG 23066 ||||| | |||||| || Sbjct 627 ATGTTGAAATCATCTGG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161494018287046