Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1557 161 2e-34 seq93 154 3e-32 seq2872 150 4e-31 seq839 123 5e-23 seq820 122 2e-22 seq1709 118 2e-21 seq2298 100 6e-16 seq210 100 6e-16 seq1893 98.7 2e-15 seq1012 96.9 7e-15 seq593 96.9 7e-15 seq2265 87.8 4e-12 seq1561 87.8 4e-12 seq152 84.2 5e-11 >seq1557 Length=337913 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || |||||||| |||| || | ||| || || || ||||||||||| || Sbjct 14393 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 14334 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||| || || ||||| ||||||||||||| ||||| || ||| ||| Sbjct 14333 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 14274 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | || | ||||||||| || || Sbjct 14273 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACA 14214 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || || |||| ||||| ||||| || ||||| Sbjct 14213 TCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq93 Length=214751 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || |||||||| |||| || | ||| || || || ||||||||||| || Sbjct 184789 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 184848 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||| || || ||||| ||||||||||||| ||||| || ||| ||| Sbjct 184849 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 184908 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | || | ||||||||| ||| || Sbjct 184909 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACC 184968 Query 283053 TCGAGAGTGATCG-TCTTACCCGTCAAAGTCTTAACG-AATATCTGCAT 283099 || | |||||||| | || || |||| ||||| ||| || || ||||| Sbjct 184969 TCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq2872 Length=49360 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| || | |||||||||||| || || ||||| ||||||||| Sbjct 1911 TCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 1852 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||||| || ||| ||| || ||||||||||| |||||||| | || ||| | Sbjct 1851 ATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTG 1792 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || | ||||||||| || || || | ||||||||| || || |||| ||||| ||| Sbjct 1791 TCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACG 1732 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 1731 AAAATTTGCAT 1721 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || |||||||| |||| || | ||| || || || ||||||||||| || Sbjct 2912 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2853 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||| || || ||||| ||||||||||||| ||||| || ||| ||| Sbjct 2852 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 2793 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || ||||||||||| |||||||| Sbjct 2792 ATGCCCTCCTTGTCCTGGATCTT 2770 >seq839 Length=159509 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || || ||| |||||| ||||||||||| |||||||| ||| Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || |||||||| ||||| || || | Sbjct 77909 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGC 77968 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 77969 GTCTTGACGAAAATTTGCATT 77989 >seq820 Length=160256 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || | |||||| | ||| || ||||| |||||||||||||| Sbjct 13195 CCGCCCCGGAGGCGCAGCAGCAGATGAAGCGTTGCGTCCTTTTGAATGTTGTAGTCAGCC 13136 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| ||| || || ||||| || |||||||||| ||||||||| || || Sbjct 13135 AAAGTGCGGTCATTATCGAGCTGTTTGCCCGCAAAGATCAGCCGTTGTTGGCCAGTTGGG 13076 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || ||| |||| |||| ||| ||| | | | | ||| |||||||| ||| || || Sbjct 13075 ATGCCTTCCGTGTCCTGGACCTTCTGTTTCAGGTTGTTGATGGTGTCCGA-GCTGTCCAC 13017 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | | || | || ||||||||||| || ||||| | |||||| Sbjct 13016 CTCCAATGCCATGGCTTTTCCCGTCAAAGTTTTCACGAAAACTTGCATT 12968 >seq1709 Length=109515 Score = 118 bits (130), Expect = 2e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||||||| || || || ||| || ||||||||||| ||||||||||| Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 283020 TTTACGGTATCGATAGTGTC-CGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAA 283078 || ||| | ||||| ||||| | | ||||| || || |||||||| || || || || | Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 283079 AGTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 13841 CGTCTTGACGAAAATTTGCATT 13862 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||||||| || || || ||| || ||||||||||| ||||||||||| Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || |||||||| || || || || | Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 18111 GTCTTCACGAAAATTTGCAT 18092 >seq2298 Length=272061 Score = 100 bits (110), Expect = 6e-16 Identities = 136/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||| ||||||||||| | || || | || || || || ||||||| ||||| Sbjct 213128 TCCTTTTGAATGTTGTAGTCCACCATGCTT-CGCATGTCTTCAAGCTGTTTCCTTGCAAA 213070 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| || |||| | | ||||| || || |||||||| || || || || ||| | Sbjct 213069 GATCAGCCGCAGTTGCTT-CTTGGAATGCCTTCTTTGTCTTGTATTTTGGCCTTCACGTT 213011 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| ||| || || || |||||||| ||||| || || | ||||| || Sbjct 213010 CTCGATAGTGTCGCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTAAGCGTCTTCAC 212951 Query 283088 GAATAT 283093 ||| || Sbjct 212950 GAAAAT 212945 >seq210 Length=19051 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||||||| || || || ||| || ||||| ||||| ||||||||||| Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || | |||||| ||||| || || | Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 8915 GTCTTCACGAAAATTTGCAT 8896 >seq1893 Length=1815 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGG-TCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC 283018 || |||||||||||||| || || || ||| || ||||||||||| ||||||||||| Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589 Query 283019 TTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAA 283078 || ||| | ||||| ||||| || || || || |||||||| || || || || | Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649 Query 283079 AGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 650 CGTCTTCACGAAAATTTGCAT 670 >seq1012 Length=142389 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||| ||||||||||||| | | || || || || ||||||||| ||| | ||| Sbjct 141423 TCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGTCGAAG 141482 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||||||||| || ||||| || || || | |||||||| || || ||| | Sbjct 141483 ATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCACGTTC 141542 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || || || || | |||||| || ||| | || ||||| || Sbjct 141543 TCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGTAATACTTGCCACTGTCTTCACA 141602 Query 283089 AATATCTGCAT 283099 || || || || Sbjct 141603 AAAATTTGTAT 141613 >seq593 Length=9788 Score = 96.9 bits (106), Expect = 7e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||| | ||||| | ||| || || || ||||||||||| | Sbjct 7164 ACCACCACGGAGACGAGACAAGAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGT 7105 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | | | || || || || ||||| |||||||||||||||| || || ||| ||| Sbjct 7104 CAAAGCAAGACCGTCTTCGAGCTGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGG 7045 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 ||| | ||||||||| ||||||||||| || || | | ||| ||||| || Sbjct 7044 AATGCGCTCCTTGTCCTGGATCTTTGCCTTCACTTTTTGGATGGTGTCGGA 6994 >seq2265 Length=474335 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||| ||||||||||| | || || | || ||||| || |||||||| ||||| Sbjct 171357 TCCTTTTGAATGTTGTAGTCCACCATGCTT-CGCATGTCCTCAAGCTGTTTCCCCGCAAA 171415 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| |||||||| || |||||| ||| | ||| | | ||| || || || || | Sbjct 171416 GATCAATCGTTGTTGCTCGGGCGGAATCCCCACTTTGCCGT-GATTTTGGCCTTCACCTT 171474 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 | |||||| || || || || || |||||||| ||||| Sbjct 171475 TTTGATAGTATCGATGGCCTCAACCTCCAGAGTGATGGTCTT 171516 >seq1561 Length=118522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 282886 GAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC--AAGCGTGCGGCC 282943 |||| || ||||| | ||| ||| || |||| ||||||||| | ||||||| ||| Sbjct 86472 GAAG-ACAAGATGGAGAGTGGATTCCTTCTGGACGTTGTAGTCGGTCAAAGCGTG--GCC 86528 Query 282944 ATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTT 283003 || || || ||||| ||| | ||||||| |||||| || ||| |||||| |||||||| Sbjct 86529 GTCTTCGAGCTGTTTTCCGACGAAGATCAGACGTTGCTGATCAGACGGAATGCCCTCCTT 86588 Query 283004 GTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 ||| |||| || |||||| || || ||||| Sbjct 86589 GTCCCAGATCAGTGACTTTACGCACTCAATTGTGTC 86624 >seq152 Length=21424 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 273771 TTCAGTTTCGTGAAAATGTACC-TGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGA 273829 || || | |||||||||||| | |||| || ||||||||| ||||| || | | Sbjct 17130 TTGAGCTGCGTGAAAATGTAACGTGGCGAA-GCTGAGTCCTTGCCGCCTTGAAGTCGAGT 17072 Query 273830 ACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGC 273889 |||||||||||| |||||| ||| |||||||||||| ||| || ||| ||| || Sbjct 17071 ACCAAACTGACCAATGGGCAGCAGCAGATTTATGTTGTTGGAACCAACAAAATTCTGTGC 17012 Query 273890 CATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGC 273937 || |||||| || || | || || ||| ||||||||||| || Sbjct 17011 CAAATTCACTATCGTGGACATCAGCGACTGCTCCCCGTGGTGATAAGC 16964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046647023818942