Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq93 114 9e-21 seq2872 113 3e-20 seq1557 113 3e-20 seq1709 107 1e-18 seq210 102 6e-17 seq839 98.7 7e-16 seq1893 96.9 2e-15 seq593 82.4 5e-11 >seq93 Length=214751 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| || |||||||| ||||| | ||| | || || Sbjct 184807 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 184866 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||||||||||| || |||||||| | || | || ||||| ||| Sbjct 184867 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 184926 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | | ||||| | ||||||||||| || ||||| ||| Sbjct 184927 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTTT 184986 Query 44309 -CCCGTGAGGGTCTTCACG-AAGATTTGCATG 44338 || || || ||||||||| || ||||||||| Sbjct 184987 GCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq2872 Length=49360 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 |||||| ||| |||||| || |||||||| ||||| | ||| | || || ||||| Sbjct 1924 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 1865 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 || ||||||||||||| || |||||||| | || | || ||||| ||| ||||| Sbjct 1864 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1805 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||||| | | | ||||| | |||||||||| || ||||| || || || Sbjct 1804 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGT 1745 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| ||||||||| Sbjct 1744 CAGTGTCTTCACGAAAATTTGCATG 1720 >seq1557 Length=337913 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| || |||||||| ||||| | ||| | || || Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||||||||||| || |||||||| | || | || ||||| ||| Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | | ||||| | ||||| |||| || ||||| || Sbjct 14255 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTG 14196 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||| ||||||||| Sbjct 14195 CCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq1709 Length=109515 Score = 107 bits (118), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||||||||||||||| | || | || ||||| ||| ||||| | Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | ||||||||| || || ||||||| || || || || || || || Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 44318 GTCTTCACGAAGATTTGCATGATG 44341 ||||||||||| |||||||||||| Sbjct 18111 GTCTTCACGAAAATTTGCATGATG 18088 Score = 102 bits (112), Expect = 6e-17 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||||||||||||||| | || | || ||||| ||| ||||| | Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 44258 TTCAATGTTCCTATGGTGTCG-GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| || | ||||||||| || ||| ||||||| || || || ||||| ||||| Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 13841 CGTCTTGACGAAAATTTGCAT 13861 >seq210 Length=19051 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||||||||||||||||||||| | || | || || || ||| ||||| | Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | ||||||||| || || ||||||| || || ||||| || || || Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 44318 GTCTTCACGAAGATTTGCATGATG 44341 ||||||||||| |||||||||||| Sbjct 8915 GTCTTCACGAAAATTTGCATGATG 8892 >seq839 Length=159509 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| |||||||||||| | || | || ||||| ||| ||||| || Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTT-GGC 77907 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | ||||||||| || || ||||||| || || ||||| || ||||| Sbjct 77908 TTTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAG 77967 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 77968 CGTCTTGACGAAAATTTGCAT 77988 >seq1893 Length=1815 Score = 96.9 bits (106), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGA-TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTG 44256 || ||||||||||||||||||||| || | || | || ||||| ||| ||||| Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589 Query 44257 CTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||||| || | ||||||||| || || ||||||| || || || || || || || Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649 Query 44317 GGTCTTCACGAAGATTTGCATGATG 44341 ||||||||||| |||||||||||| Sbjct 650 CGTCTTCACGAAAATTTGCATGATG 674 >seq593 Length=9788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 || ||||| ||| |||||| || |||||||| |||| | | |||| || ||| Sbjct 7142 AGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGTCAAAGCAAGACCGTCTTCGAGC 7083 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 || || |||||||||||||||| ||||||||| || || | | ||||| ||| ||| Sbjct 7082 TGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGGAATGCGCTCCTTGTCCTGGATC 7023 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGG 44279 || ||||| | || |||||||||| Sbjct 7022 TTTGCCTTCACTTTTTGGATGGTGTCGG 6995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960245516641