Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2872 149 2e-30 seq93 147 5e-30 seq1557 145 2e-29 seq820 136 1e-26 seq1709 114 3e-20 seq839 104 6e-17 seq210 98.7 2e-15 seq1893 96.9 8e-15 seq1012 93.3 1e-13 seq1561 91.5 4e-13 seq2298 84.2 5e-11 >seq2872 Length=49360 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||||||||| | |||||||| || || ||| Sbjct 1724 CAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCGGAC 1783 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || ||||| |||||||| || || ||||| || || |||||| Sbjct 1784 ACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAA 1843 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||||||||||||||| | || | ||||| || ||| | Sbjct 1844 CGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATT 1903 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || || || Sbjct 1904 CAGAAGGAGTCCACTCTTCA 1923 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || || |||||||| || ||||| ||||| ||| Sbjct 2770 AAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAA 2829 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||||||||| | || | ||||| || ||| | || || || || || || || Sbjct 2830 CAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCACTCTTCA- 2888 Query 178125 CTTG 178128 |||| Sbjct 2889 CTTG 2892 >seq93 Length=214751 Score = 147 bits (162), Expect = 5e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGG-AAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||| || || || || |||||||||||| | ||||||||||| || ||| Sbjct 185012 AATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTTCGGAC 184953 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || ||||| |||||||| || || ||||| || || |||||| Sbjct 184952 ACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAA 184893 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||||||||||||||| | || | ||||| || ||| | Sbjct 184892 CGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATT 184833 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 184832 CAGAAGGAGTCCACTCTTCA-CTTG 184809 >seq1557 Length=337913 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||||||||| | || ||||| || || ||| Sbjct 14170 CAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCGGAC 14229 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || ||||| |||||||| || || ||||| || || |||||| Sbjct 14230 ACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAA 14289 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||||||||||||||| | || | ||||| || ||| | Sbjct 14290 CGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATT 14349 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 14350 CAGAAGGAGTCCACTCTTCA-CTTG 14373 >seq820 Length=160256 Score = 136 bits (150), Expect = 1e-26 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| |||||||||||||| | || |||||| | || | | |||||||| ||||| ||| Sbjct 12972 CAAGTTTTCGTGAAAACTTTGACGGGAAAAGCCATGGCATTGGAGGTGGACAGCTCGGAC 13031 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||| | ||| | ||||| ||| | ||||||| ||||| ||||| | | ||| ||| Sbjct 13032 ACCATCAACAACCTGAAACAGAAGGTCCAGGACACGGAAGGCATCCCAACTGGCCAACAA 13091 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||||||||| ||| | ||| | || || || ||| | Sbjct 13092 CGGCTGATCTTTGCGGGCAAACAGCTCGATAATGACCGCACTTTGGCTGACTACAACATT 13151 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 ||||| || |||| || ||||| Sbjct 13152 CAAAAGGACGCAACGCTTCATCT 13174 >seq1709 Length=109515 Score = 114 bits (126), Expect = 3e-20 Identities = 109/138 (79%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 ||||||||||| || || ||||| |||||||| ||||| || ||||| ||| || || Sbjct 13858 CAAATTTTCGTCAAGACGCTCACCGGAAAAACCATCACTCTGGAGGTTGAAGCCTAGCGA 13799 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||| ||||| || |||||| |||||||| || || ||||| ||||| ||||| Sbjct 13798 CACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCA 13739 Query 178043 ACGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 13738 GCGTTTGATCTTTGCCGG 13721 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||| ||||| || ||||| || | ||| Sbjct 18095 CAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGCGAC 18154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||| |||||||| || || ||||| ||||| ||||| Sbjct 18155 ACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAGCAG 18214 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 18215 CGTTTGATCTTTGCCGG 18231 >seq839 Length=159509 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||| || ||||| || | ||| Sbjct 77985 CAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTCGAGGCCAGCGAC 77926 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||||| |||||||| || || || || || || ||||| Sbjct 77925 ACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAGCAG 77866 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 77865 CGTCTGATCTTTGCCGG 77849 >seq210 Length=19051 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || || || ||||| | ||||| || | ||| Sbjct 8899 CAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCCAGCGAC 8958 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 8959 ACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCGGATCAGCAG 9018 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| || || Sbjct 9019 CGTTTGATCTTTGCTGG 9035 >seq1893 Length=1815 Score = 96.9 bits (106), Expect = 8e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||| ||||| || ||||| || | ||| Sbjct 667 CAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGCGAC 608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA-CCAGCA 178042 |||||||| ||||| || |||||| |||||||| || || ||||| ||||| ||||| Sbjct 607 ACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAGTCAGCA 548 Query 178043 ACGACTTATCTTCGCCGG 178060 || | ||||| || || Sbjct 547 GCGTTTGATCTTTGCTGG 530 >seq1012 Length=142389 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | || | | || ||||| | ||||| || | ||| Sbjct 141610 CAAATTTTTGTGAAGACAGTGGCAAGTATTACCATCACTTTGGAGGTTGAGGCCAACGAC 141551 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||| | |||||||| || || | ||| || ||| Sbjct 141550 ACCATCGAGAACGTGAAGGCGAAGATCCAGAAGAAAGAAGGCATTCCCCTGGATCAACAA 141491 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||| ||||||||| || || || | || | |||| || ||| || Sbjct 141490 CGTCTGATCTTCGACGGAAAACAACTATGCGACGGTCGAACATTGACCGACTACAACATC 141431 Query 178104 CAAAAAGAATC 178114 | |||||| || Sbjct 141430 CGAAAAGAGTC 141420 >seq1561 Length=118522 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 178013 GGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGA 178072 |||||| || || || || | || |||||||| || ||||||| ||||||||||||||| Sbjct 86592 GGACAAGGAGGGCATTCCGTCTGATCAGCAACGTCTGATCTTCGTCGGAAAACAGCTCGA 86533 Query 178073 AGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||| || || | |||| || |||||||| || ||||| || || |||||||| || Sbjct 86532 AGACGGCCACGCTTTGACCGACTACAACGTCCAGAAGGAATCCACTCTCCATCTTGTCTT 86473 >seq2298 Length=272061 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGAC 177983 ||||||||||||| || || || ||||| || ||||| || ||||| | | ||| ||| Sbjct 212943 AAATTTTCGTGAAGACGCTTACCGGAAAGACCATCACTCTGGAGGTTG-AGGCTAGCGAC 213001 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || || || ||||||||||| || || | | || | Sbjct 213002 ACTATCGAGAACGTGAAGGCCAAAATACAAGACAAAGAAGGCATTCC-AAGAAGCAACTG 213060 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || || ||||| || | |||||||| ||||| Sbjct 213061 CGGCTGATCTTTGCAAGGAAACAGCTTGAAGA 213092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203625199054362