Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1557 134 1e-26 seq2872 131 2e-25 seq93 122 8e-23 seq593 87.8 2e-12 >seq1557 Length=337913 Score = 134 bits (148), Expect = 1e-26 Identities = 172/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||| || || ||| ||||||||||||||| ||||||| Sbjct 14394 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 14335 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||| |||||||| || ||||| || || || || | || Sbjct 14334 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 14275 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CT 41810 | || |||||||||| ||| || |||| ||| | | || ||||| ||| || Sbjct 14274 GATGCCCTCCTTGTCCTGGATCTTCGTCTTC-ACGTTGTCAACTGTGTC---CGAACTCT 14219 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| |||| || |||||||| || ||||| ||||| |||||||| |||||| Sbjct 14218 CCACATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 131 bits (144), Expect = 2e-25 Identities = 156/208 (75%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||| ||||||||||||||| ||||||| | ||||| | || |||||||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 |||||||| || ||||| || || || || | || | || |||||||||| ||| || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 41780 TGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGTTTTACC 41835 |||| ||| | | || ||||| ||| ||||||||||| || |||||||| || Sbjct 1803 GTCTTC-ACGTTGTCAACTGTGTC---CGAACTCTCCACCTCCAAAGTGATCGTTTTGCC 1748 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| |||||||| |||||| Sbjct 1747 GGTCAGTGTCTTCACGAAAATTTGCATG 1720 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||| || || ||| ||||||||||||||| ||||||| Sbjct 2913 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 2854 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||| |||||||| || ||||| || || || || | || Sbjct 2853 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 2794 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 2793 GATGCCCTCCTTGTCCTGGATCTT 2770 >seq93 Length=214751 Score = 122 bits (134), Expect = 8e-23 Identities = 172/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||| || || ||| ||||||||||||||| ||||||| Sbjct 184788 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 184847 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||| |||||||| || ||||| || || || || | || Sbjct 184848 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 184907 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CT 41810 | || |||||||||| ||| || |||| ||| | | || ||||| ||| | Sbjct 184908 GATGCCCTCCTTGTCCTGGATCTTCGTCTTC-ACGTTGTCAACTGTGTC---CGAACTTT 184963 Query 41811 CCACCTCCACCGTTATCG-TTTTACCCGTCAGCGTCTTTACG-AAAATCTGCATG 41863 ||||||||| || |||| |||| || ||||| ||||| ||| ||||| |||||| Sbjct 184964 CCACCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq593 Length=9788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||| ||||| || ||| ||||||||||||||| ||||||| Sbjct 7163 CCACCACGGAGACGAGACAAGAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGTC 7104 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | | | |||| |||||||| || ||||| || |||| | ||| || || | ||| Sbjct 7103 AAAGCAAGACCGTCTTCGAGCTGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGGA 7044 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| ||| ||| ||||| Sbjct 7043 ATGCGCTCCTTGTCCTGGATCTTTGCCTTCA 7013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264282307600