Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq106257 87.8 4e-12
seq57410 87.8 4e-12
seq7426 87.8 4e-12
seq4674 87.8 4e-12
seq49957 86.0 1e-11
seq79642 84.2 5e-11
seq13140 84.2 5e-11
>seq106257
Length=660
Score = 87.8 bits (96), Expect = 4e-12
Identities = 62/70 (89%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762
|||||| ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||
Sbjct 71 AACGCT-GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGG 13
Query 165763 TTCGAGCCCC 165772
||||||||||
Sbjct 12 TTCGAGCCCC 3
>seq57410
Length=1524
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 880 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 939
Query 165776 ATGGGC 165781
||||
Sbjct 940 GGGGGC 945
>seq7426
Length=7879
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 2506 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 2447
Query 165776 ATGGGC 165781
||||
Sbjct 2446 GGGGGC 2441
>seq4674
Length=9829
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 4986 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 5045
Query 165776 ATGGGC 165781
||||
Sbjct 5046 GGGGGC 5051
>seq49957
Length=1799
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGA 165776
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1799 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACGG 1740
Query 165777 TGGGC 165781
||||
Sbjct 1739 GGGGC 1735
>seq79642
Length=992
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775
||||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||
Sbjct 17 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCAAGTCCCACG 76
Query 165776 ATGGGC 165781
||||
Sbjct 77 GGGGGC 82
>seq13140
Length=5705
Score = 84.2 bits (92), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 2465 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2406
Query 165769 CCCC 165772
||||
Sbjct 2405 CCCC 2402
Score = 84.2 bits (92), Expect = 5e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 3022 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2963
Query 165769 CCCC 165772
||||
Sbjct 2962 CCCC 2959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056083733738630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |