Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq106257 87.8 4e-12 seq57410 87.8 4e-12 seq7426 87.8 4e-12 seq4674 87.8 4e-12 seq49957 86.0 1e-11 seq79642 84.2 5e-11 seq13140 84.2 5e-11 >seq106257 Length=660 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 |||||| ||||| |||||||||||||||||| ||||||| ||||||||| |||| ||| Sbjct 71 AACGCT-GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGG 13 Query 165763 TTCGAGCCCC 165772 |||||||||| Sbjct 12 TTCGAGCCCC 3 >seq57410 Length=1524 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 880 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 939 Query 165776 ATGGGC 165781 |||| Sbjct 940 GGGGGC 945 >seq7426 Length=7879 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 2506 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 2447 Query 165776 ATGGGC 165781 |||| Sbjct 2446 GGGGGC 2441 >seq4674 Length=9829 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 4986 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 5045 Query 165776 ATGGGC 165781 |||| Sbjct 5046 GGGGGC 5051 >seq49957 Length=1799 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGA 165776 |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 1799 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACGG 1740 Query 165777 TGGGC 165781 |||| Sbjct 1739 GGGGC 1735 >seq79642 Length=992 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||||||||||||| |||||||||||| || |||||| Sbjct 17 CTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCAAGTCCCACG 76 Query 165776 ATGGGC 165781 |||| Sbjct 77 GGGGGC 82 >seq13140 Length=5705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 2465 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2406 Query 165769 CCCC 165772 |||| Sbjct 2405 CCCC 2402 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 3022 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2963 Query 165769 CCCC 165772 |||| Sbjct 2962 CCCC 2959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056083733738630