Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq65209 104 2e-17 seq29780 82.4 6e-11 >seq65209 Length=1292 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||||||| || |||||||| |||||||| |||| || || | ||||| Sbjct 476 AGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCC 535 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| ||||| ||| ||||||| | ||||| ||| || | || || ||||| Sbjct 536 TCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCC 595 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || || | |||| ||||| || || ||| Sbjct 596 TGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTC 655 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || ||||||||||| || || ||||| Sbjct 656 TTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq29780 Length=3062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| | ||||| ||| | || ||||||||||| ||||| ||||||| | Sbjct 649 CCGCCGCGCAGCCGTAACACCAAATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCCGAC 708 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAA 21048 || ||| || | |||||||| |||||||| || ||| || Sbjct 709 AGCGTTCGGCCATCCTCCAGTTGTTTGCCTACAGAAAAAA 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421598411988116