Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq65209 105 7e-18 seq32511 86.0 6e-12 seq14519 82.4 8e-11 >seq65209 Length=1292 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||| | |||||||| || ||||| | || || || || | Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||||||||| ||||| |||| || Sbjct 627 GACACCATTGAGAACGTT-AAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCA 569 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || ||||| ||| |||| |||| ||||| | || || || Sbjct 568 GCAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAA 509 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| | || ||||||| || Sbjct 508 CATCCAAAAGGAATCGACTTTGCATCTCGT 479 >seq32511 Length=2827 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || ||||||||||| || ||||| || || || || || |||||||||||||||||| Sbjct 1477 GCAGGCAAACAGCTCGAGGACGATCGAACTCTGTCGGATTATAACATCCAGAAGGAGGCC 1418 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||| |||||| |||| || ||||||| Sbjct 1417 ACGTTGCACCTAGTGCTGCGGTTACGGGGCGG 1386 >seq14519 Length=5345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| | ||||| ||||| ||||| | || || || || | Sbjct 3910 ATGCAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCG 3969 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||| | | ||| |||| ||| ||||||||||||||||| |||| || Sbjct 3970 GATACGATTGAAAATGTTAAAGCGAAAA-TTCAGGACAAAGAGGGCATCCCTCCGGATCA 4028 Query 40809 GCAACGACTCATCT 40822 ||| || ||||||| Sbjct 4029 GCAGCGCCTCATCT 4042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514392266743760