Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 105 7e-18
seq32511 86.0 6e-12
seq14519 82.4 8e-11
>seq65209
Length=1292
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| |||||| | |||||||| || ||||| | || || || || |
Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||||||||| ||||| |||| ||
Sbjct 627 GACACCATTGAGAACGTT-AAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCA 569
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || || | || ||||| ||| |||| |||| ||||| | || || ||
Sbjct 568 GCAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAA 509
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||| ||||| | || ||||||| ||
Sbjct 508 CATCCAAAAGGAATCGACTTTGCATCTCGT 479
>seq32511
Length=2827
Score = 86.0 bits (94), Expect = 6e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884
|| ||||||||||| || ||||| || || || || || ||||||||||||||||||
Sbjct 1477 GCAGGCAAACAGCTCGAGGACGATCGAACTCTGTCGGATTATAACATCCAGAAGGAGGCC 1418
Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| |||| |||||| |||| || |||||||
Sbjct 1417 ACGTTGCACCTAGTGCTGCGGTTACGGGGCGG 1386
>seq14519
Length=5345
Score = 82.4 bits (90), Expect = 8e-11
Identities = 100/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || |||||||| | ||||| ||||| ||||| | || || || || |
Sbjct 3910 ATGCAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCG 3969
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | || ||| | | ||| |||| ||| ||||||||||||||||| |||| ||
Sbjct 3970 GATACGATTGAAAATGTTAAAGCGAAAA-TTCAGGACAAAGAGGGCATCCCTCCGGATCA 4028
Query 40809 GCAACGACTCATCT 40822
||| || |||||||
Sbjct 4029 GCAGCGCCTCATCT 4042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514392266743760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |