Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14519 105 6e-18 seq29780 100 2e-16 seq65209 93.3 4e-14 seq97776 86.0 5e-12 seq19432 84.2 2e-11 >seq14519 Length=5345 Score = 105 bits (116), Expect = 6e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| ||||||| ||||||||||| ||||| |||||||| ||||| |||||| | Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||| | || |||| ||| ||| ||||| | || | |||||| || || | Sbjct 3989 TTAACATTTTCAATCGTATCCGATGC-CTCTACCTCCAAAGTGATCGTTTTACCCGTTAA 3931 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 |||||||||||||| |||||| Sbjct 3930 GGTTTTTACAAAAATTTGCATG 3909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || ||||||||||| || || || ||||||||||| ||| || | Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | |||| ||| || | ||| |||||| || | || | |||||||| ||||| Sbjct 5048 TTCACATTCTCGATGGTATCTGATGC-CTCGACTTCCAGCGTAATGGTTTTGCCAGTCAG 4990 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 ||| || || || |||||||| Sbjct 4989 AGTCTTCACGAAGATCTGCAT 4969 >seq29780 Length=3062 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| | || |||||||||||||| ||||| ||||| |||||||| ||| || Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| ||||| | ||| || || | || | ||||||||||||||| Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||| |||||||||||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq65209 Length=1292 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| ||||| ||||| || |||||| ||||| | ||| || || Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCG 550 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||| |||||||| ||||| || ||||| ||||| || || ||| Sbjct 551 GCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTTA 610 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | |||||||| ||| ||| || || | || | || ||||| |||| || Sbjct 611 ACGTTCTCAATGGTGTCCGATGC-CTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGT 669 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| || ||||||||||| Sbjct 670 TTTGACGAAAATCTGCAT 687 >seq97776 Length=741 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || ||||||||||| || || || ||||||||||| ||| || | Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | |||| |||||| | ||| ||||| || | || | |||||||| ||||| Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCT-TCGACTTCCAGCGTGATGGTTTTGCCAGTCAG 50 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 ||| || || || |||||||| Sbjct 49 AGTCTTCACGAAGATCTGCAT 29 >seq19432 Length=4349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||||||||| || |||||||| |||||||| || ||| || || | || | Sbjct 1931 ACGCTGCTGATCCGGTGGTATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAAT 1990 Query 118673 GGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAA 118731 ||| |||| ||| ||| ||||| | || | ||||||||| || || ||||| ||| ||| Sbjct 1991 GGTATCCGATGC-CTCCACCTCCAGAGTGATCGTTTTGCCAGTGAGCGTTTTCACATAAA 2049 Query 118732 TCTGCATG 118739 |||||||| Sbjct 2050 TCTGCATG 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433151504365492