Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1597 96.9 4e-15 seq73987 95.1 1e-14 seq14620 95.1 1e-14 seq14493 95.1 1e-14 seq2467 95.1 1e-14 seq106462 84.2 2e-11 seq27460 82.4 9e-11 >seq1597 Length=15151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 6331 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 6272 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 6271 TACTACCGAGGAT 6259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7937 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7878 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 7877 TACTACCGAGGA 7866 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 6075 GGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTATACTACCGAG 6016 Query 60136 GA 60137 || Sbjct 6015 GA 6014 >seq73987 Length=1096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||| Sbjct 792 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCA 851 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 852 CTATACTACCGAGGA 866 >seq14620 Length=5323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 1842 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 1783 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 1782 TACTACCGAGGA 1771 >seq14493 Length=5350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4466 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4525 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 4526 TACTACCGAGGA 4537 >seq2467 Length=12765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 351 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 292 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 291 TACTACCGAGGA 280 >seq106462 Length=659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 66 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7 Query 60126 TACTAC 60131 |||||| Sbjct 6 TACTAC 1 >seq27460 Length=3287 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||| || || || || || ||||| || | ||| | || ||||||||| ||| |||| Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCC-TGAATTTT 2293 Query 43101 TGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 ||| || | | | | || || |||||||| || | |||||| || ||||| || Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| || ||||||||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570899825604280