Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 89.7 3e-13
seq97776 86.0 4e-12
>seq29780
Length=3062
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || || || ||||| |||||||||||||| || || ||
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| ||||||||| || ||||| | |||||||| || |||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || ||||| ||||| ||| | | | |||| ||| | || ||| ||
Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| || || || || | |||||| || || || |||||
Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303
||| | || |||||||| || |||||||| || || | || |||||||| |||
Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561
Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363
|| ||||| | | |||| |||| || || || |||| ||||| |||||||||
Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621
Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||||||| ||||| ||||||||
Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647
>seq97776
Length=741
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34250 CCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGC 34309
|||||||| || ||||||||||| || || | | ||||||||| |||||
Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109
Query 34310 TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGA 34369
|||| | | || | || | || |||||| |||| ||||||||||||||| || |||
Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49
Query 34370 GTTTTCACAAAGATCTGCAT 34389
|| ||||| |||||||||||
Sbjct 48 GTCTTCACGAAGATCTGCAT 29
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322566428766560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |