Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq29780 129 5e-25 seq73431 116 3e-21 seq65209 100 3e-16 seq248 93.3 4e-14 seq27460 89.7 5e-13 seq97776 86.0 6e-12 seq3361 82.4 7e-11 >seq29780 Length=3062 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| |||| || || |||||||| | || || ||| |||| Sbjct 233 CATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTC 174 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| ||||| || || |||||| |||||| | || || || || Sbjct 173 GGATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCA 114 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| |||| || || ||||| ||| |||||||| | ||| | |||||||| Sbjct 113 GCAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAA 54 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||| | ||||| || ||| Sbjct 53 CATACAGAAAGAGTCGACTTTGCATCTCGTCCTT 20 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || |||||||| |||||||| ||||| | || || || |||||| Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||||| | || || || ||| Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || |||||||| Sbjct 527 CAGCGTCTTATTTTCGCTGG 508 >seq73431 Length=1108 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| ||||||| || |||||||| | || || ||| |||| Sbjct 567 CATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTC 508 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| ||||| || || | |||| |||||| | || || || || Sbjct 507 GGATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCA 448 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || |||||||| |||||||||||| | ||| | |||||||| Sbjct 447 GCAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAA 388 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || | | ||||| | ||||| || ||| Sbjct 387 CATCCAGGAGAAGTCGACCTTACATCTCGTCCTT 354 >seq65209 Length=1292 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || |||| ||||| || ||||| | || || || | || Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||| || || | || || || ||| Sbjct 627 GACACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 568 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| |||||||| ||| | ||| || ||||||||| Sbjct 567 CAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAAC 508 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| ||||||||| | ||||| || ||| Sbjct 507 ATCCAAAAGGAATCGACTTTGCATCTCGTCCTT 475 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||| || ||||| | || || || ||||| Sbjct 1100 ATGCAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCC 1041 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| || || || |||||| |||||| | || || || || Sbjct 1040 GACACGATTGAAAACGTCAAGGCAAAG-ATCCAGGACAAAGAAGGCATTCCCCCAGATCA 982 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || || ||||| Sbjct 981 GCAGCGACTTATCTTTGCTGG 961 >seq248 Length=25315 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||||| || | ||| ||||||| ||| || || || || || ||||| |||||||| Sbjct 454 GTAAACATTTGTAGTGTACGGTTCAAAACTCTCGTTATTGCCGAGAATCTGTGCGGTCGA 395 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 ||| || ||||| ||||| | |||||| |||||| | |||| ||| |||||| || Sbjct 394 AGCTGTGGGCATTGGCGCAAGCAGTAGGCTGTTTCTGATGCCGCATTTTTCAATTTT-CT 336 Query 22612 CTTG-AGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATT 22670 | || | |||||||||| |||| | || |||||||| ||||||||| ||| Sbjct 335 GACGTAGACTACTCCAGTCCCACTGATCCGTTGGTGTCACATT---CCACATATCAAATT 279 Query 22671 GCAA 22674 |||| Sbjct 278 GCAA 275 >seq27460 Length=3287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| |||||||| | || || ||| | || Sbjct 2378 CATGCAAATCTTCGTGAAGACGCTAACCGGCAAGACGATCACGCTTGAGGTGGAATCCTC 2319 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || ||| | ||| ||||||||||||| | ||||| || | Sbjct 2318 GGATACCATCGAAAATGTGAAGACAAA-AATTCAGGACAAGGAAGGCATCCCGCCGGATC 2260 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAA 31336 |||| ||||| || || || || ||| Sbjct 2259 AGCAACGTCTGATCTTTGCAGGTAAA 2234 >seq97776 Length=741 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| |||||||| ||||| | || || ||| |||| Sbjct 29 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCT 88 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||| || | || || || ||| Sbjct 89 GACACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 148 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || ||||| || Sbjct 149 CAGCGGCTTATCTTCGCAGG 168 >seq3361 Length=11312 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 57997 AAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGA 58056 |||| ||||| || || || || ||||| |||||||||||| | ||||||||||| | | Sbjct 2082 AAGGAATATTTTTCTCTGGAAGTTTTGCTGCAATATTTTGGCTCAAGAAACGCGGTTTAA 2141 Query 58057 TGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || | || ||||| || ||||||||||| || | ||||||| Sbjct 2142 TGTCTGGTTTGACGCACAGTAACGAGTTGATTTCAAGAGACGAGG 2186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445050939355920