Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq27460 118 1e-21 seq65209 104 2e-17 seq29780 95.1 1e-14 >seq27460 Length=3287 Score = 118 bits (130), Expect = 1e-21 Identities = 117/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||| ||| ||||||||||||||||||| || || |||||||| ||||| ||| ||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTC-CTGAATTT 2292 Query 139681 TTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 |||| || | | ||| | || || | || |||||||||| || | ||||||||||| Sbjct 2293 TTGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGG 2352 Query 139740 TCAACGTTTTTACGAATATTTGCATAGCT 139768 | | ||| || ||||| |||||||| ||| Sbjct 2353 TTAGCGTCTTCACGAAGATTTGCATGGCT 2381 >seq65209 Length=1292 Score = 104 bits (114), Expect = 2e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| ||||||||||| || |||| ||| || | ||| || || Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCG 550 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || |||||||||||||| ||||| || || |||||||| || | || | || Sbjct 551 GCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTC-CTGGATCTTCGCCTT 609 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | |||| || | ||||| | | |||||| || | || | |||||||| ||||||| Sbjct 610 AAC-GTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACG 668 Query 139746 TTTTTACGAATATTTGCATA 139765 |||| ||||| || |||||| Sbjct 669 TTTTGACGAAAATCTGCATA 688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| |||| || || |||||||| || || |||||||||||||| ||| ||| Sbjct 959 TACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTG 1018 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | ||| | ||||||| | ||||||||| | || | ||||||||||| | Sbjct 1019 CCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGA 1078 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 || || ||||| ||||||||| Sbjct 1079 GAGTCTTCACGAAAATTTGCATA 1101 >seq29780 Length=3062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||||||||| | |||| |||||| ||||| || || Sbjct 36 GTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCG 95 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | || |||||||| || || |||||||||||||| ||| || || Sbjct 96 GCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTG 155 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || || | | ||||| || | || | |||||| || ||||| ||| Sbjct 156 ACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTT 215 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 216 TTGACGAAAATTTGCAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495267811079200