Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq27460 118 1e-21
seq65209 104 2e-17
seq29780 95.1 1e-14
>seq27460
Length=3287
Score = 118 bits (130), Expect = 1e-21
Identities = 117/149 (79%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|||||| ||| ||||||||||||||||||| || || |||||||| ||||| ||| |||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTC-CTGAATTT 2292
Query 139681 TTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
|||| || | | ||| | || || | || |||||||||| || | |||||||||||
Sbjct 2293 TTGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGG 2352
Query 139740 TCAACGTTTTTACGAATATTTGCATAGCT 139768
| | ||| || ||||| |||||||| |||
Sbjct 2353 TTAGCGTCTTCACGAAGATTTGCATGGCT 2381
>seq65209
Length=1292
Score = 104 bits (114), Expect = 2e-17
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || ||||| ||||||||||| || |||| ||| || | ||| || ||
Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCG 550
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || |||||||||||||| ||||| || || |||||||| || | || | ||
Sbjct 551 GCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTC-CTGGATCTTCGCCTT 609
Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
| | |||| || | ||||| | | |||||| || | || | |||||||| |||||||
Sbjct 610 AAC-GTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACG 668
Query 139746 TTTTTACGAATATTTGCATA 139765
|||| ||||| || ||||||
Sbjct 669 TTTTGACGAAAATCTGCATA 688
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| |||| || || |||||||| || || |||||||||||||| ||| |||
Sbjct 959 TACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTG 1018
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
|| | | ||| | ||||||| | ||||||||| | || | ||||||||||| |
Sbjct 1019 CCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGA 1078
Query 139743 ACGTTTTTACGAATATTTGCATA 139765
|| || ||||| |||||||||
Sbjct 1079 GAGTCTTCACGAAAATTTGCATA 1101
>seq29780
Length=3062
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||||||||| | |||| |||||| ||||| || ||
Sbjct 36 GTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCG 95
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || | || |||||||| || || |||||||||||||| ||| || ||
Sbjct 96 GCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTG 155
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | ||| | || || | | ||||| || | || | |||||| || ||||| |||
Sbjct 156 ACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTT 215
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| ||||||||
Sbjct 216 TTGACGAAAATTTGCAT 232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495267811079200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |