Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq27460 109 6e-19 seq29780 98.7 1e-15 seq65209 91.5 1e-13 seq73431 82.4 8e-11 >seq27460 Length=3287 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||| ||| ||||||||||||||||||| || || |||||||| ||||| |||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | || | | ||| | || |||| || ||| || |||| || | |||||||||||| Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 143161 CAATGTTTTTACGAATATTTGCATAGCT 143188 | || || ||||| |||||||| ||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCATGGCT 2381 >seq29780 Length=3062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| |||||||| ||||| | |||| |||||| || || || || Sbjct 36 GTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCG 95 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || | || |||||||| || || |||||||||||||| || || || Sbjct 96 GCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTG 155 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||| |||| | ||| ||||| | ||| | |||||| || ||||| ||| Sbjct 156 ACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTT 215 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 216 TTGACGAAAATTTGCAT 232 >seq65209 Length=1292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||| ||||| || |||| ||| || | || || || Sbjct 491 GTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCG 550 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || |||||||||||||| ||||| || || |||||||| || || || Sbjct 551 GCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTTA 610 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | || ||||| | ||| | |||||||| ||||| ||| Sbjct 611 ACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTT 670 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 671 TTGACGAAAATCTGCATA 688 >seq73431 Length=1108 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||| | || || |||||| | || | | |||||||| || || ||||||||||| Sbjct 411 GTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTT 470 Query 143089 GT-CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 || | | | || || ||| ||| | ||| |||| | ||| ||||||| ||| | Sbjct 471 GTGCTGGATCTTCGCCTTGACGCT-TTCGATCGTATCCGACGCTTCCACTTCAAAAGTGA 529 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || ||||| ||||| ||||| |||||||| Sbjct 530 TCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506200635550320