Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq29780 114 8e-21 seq73431 86.0 4e-12 >seq29780 Length=3062 Score = 114 bits (126), Expect = 8e-21 Identities = 151/208 (73%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| ||||||||||| ||||| || ||||| || | | || | ||| |||| || Sbjct 29 ATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTG 88 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282 ||| || ||| ||||| || ||||| || | ||| ||||||||||| || | | | Sbjct 89 CTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTT 148 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 |||| || || ||| ||||| || | || || |||| ||| ||||| || || Sbjct 149 CGCC---TTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCC 205 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| | |||||| ||||||||||||||| Sbjct 206 CGTCAAAGTTTTGACGAAAATTTGCATG 233 >seq73431 Length=1108 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| || ||||||| | || || || ||||| || | | || | ||| ||||| || Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTG 422 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT-AATCG 33284 ||| ||| ||| ||||| | ||||| || | ||| ||||||||||| | ||| ||| Sbjct 423 CTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGT-GCTGGATCT 481 Query 33285 CCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCG 33344 | || || ||| ||||| || | || || || | ||| ||||| || || | Sbjct 482 TCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTG 541 Query 33345 TAAGAGTTTTTACGAAAATTTGCATG 33370 | | |||||| ||||||||||||||| Sbjct 542 TCAAAGTTTTGACGAAAATTTGCATG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318278749018098