Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 114 8e-21
seq73431 86.0 4e-12
>seq29780
Length=3062
Score = 114 bits (126), Expect = 8e-21
Identities = 151/208 (73%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225
|||||| ||||||||||| ||||| || ||||| || | | || | ||| |||| ||
Sbjct 29 ATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTG 88
Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282
||| || ||| ||||| || ||||| || | ||| ||||||||||| || | | |
Sbjct 89 CTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTT 148
Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342
|||| || || ||| ||||| || | || || |||| ||| ||||| || ||
Sbjct 149 CGCC---TTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCC 205
Query 33343 CGTAAGAGTTTTTACGAAAATTTGCATG 33370
||| | |||||| |||||||||||||||
Sbjct 206 CGTCAAAGTTTTGACGAAAATTTGCATG 233
>seq73431
Length=1108
Score = 86.0 bits (94), Expect = 4e-12
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225
||| || ||||||| | || || || ||||| || | | || | ||| ||||| ||
Sbjct 363 ATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTG 422
Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT-AATCG 33284
||| ||| ||| ||||| | ||||| || | ||| ||||||||||| | ||| |||
Sbjct 423 CTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGT-GCTGGATCT 481
Query 33285 CCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCG 33344
| || || ||| ||||| || | || || || | ||| ||||| || || |
Sbjct 482 TCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTG 541
Query 33345 TAAGAGTTTTTACGAAAATTTGCATG 33370
| | |||||| |||||||||||||||
Sbjct 542 TCAAAGTTTTGACGAAAATTTGCATG 567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318278749018098
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |