Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq73431 123 6e-23
seq29780 100 7e-16
seq14519 100 7e-16
>seq73431
Length=1108
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || |||||||| || || | | ||| || ||||| || |||||||| | ||||||
Sbjct 354 AAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTC 413
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | || || ||||||||||||| ||||| ||||| || || || |||||||| |
Sbjct 414 TTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTG 473
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || || || |||| | ||||| | ||| || || | || || ||
Sbjct 474 CTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGT 533
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || | ||||| || || || |||||
Sbjct 534 CTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566
>seq29780
Length=3062
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| ||||| || | ||| ||||||||||| || ||||| || ||||||||||| ||
Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||| || || | || ||| || || || || || || || || || || || ||
Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||| ||||||||
Sbjct 628 GTTTTAACAAAAATCTGCAT 647
>seq14519
Length=5345
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || || | ||| ||||| ||||| || || ||||| |||||||| || |||
Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| | |||||||| | || || || ||||| || |
Sbjct 3989 TTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAG 3930
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 3929 GTTTTTACAAAAATTTGCAT 3910
Score = 96.9 bits (106), Expect = 8e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
|||||| || |||| ||| ||||| || || || || || || ||||||||||| |||||
Sbjct 4617 AGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTT 4558
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|||||||| | |||||| | ||| || || || || || || || ||||| | ||
Sbjct 4557 CACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGT 4498
Query 104542 TTTTACAAATATCTGCAT 104559
|| || |||||||||||
Sbjct 4497 CTTGACGAATATCTGCAT 4480
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || |||| ||| ||||| || || || || || || ||||||||||| |||
Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | |||||| | || || || || ||||| || || ||||| ||
Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || || || ||||||||
Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149504190954908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |