Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq73431 123 6e-23 seq29780 100 7e-16 seq14519 100 7e-16 >seq73431 Length=1108 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || |||||||| || || | | ||| || ||||| || |||||||| | |||||| Sbjct 354 AAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTC 413 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || ||||||||||||| ||||| ||||| || || || |||||||| | Sbjct 414 TTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTG 473 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || |||| | ||||| | ||| || || | || || || Sbjct 474 CTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGT 533 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||||| || || || ||||| Sbjct 534 CTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq29780 Length=3062 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| || | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || || | || ||| || || || || || || || || || || || || Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq14519 Length=5345 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | ||| ||||| ||||| || || ||||| |||||||| || ||| Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCT 3990 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| | |||||||| | || || || ||||| || | Sbjct 3989 TTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAG 3930 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 3929 GTTTTTACAAAAATTTGCAT 3910 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||| || |||| ||| ||||| || || || || || || ||||||||||| ||||| Sbjct 4617 AGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTT 4558 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | |||||| | ||| || || || || || || || ||||| | || Sbjct 4557 CACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGT 4498 Query 104542 TTTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4497 CTTGACGAATATCTGCAT 4480 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || |||| ||| ||||| || || || || || || ||||||||||| ||| Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | || || || || ||||| || || ||||| || Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || |||||||| Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149504190954908