Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq65209 100 3e-16 seq97776 98.7 9e-16 seq29780 98.7 9e-16 seq76917 93.3 4e-14 >seq65209 Length=1292 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||||||| ||||||||||| | ||||||||| || |||| ||||||| ||| Sbjct 485 TGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGC 544 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| |||| || | | ||||||||| ||||| ||||| |||||||| | || || Sbjct 545 TTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTC 604 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| | | ||||| | || || || | ||||| || || || || Sbjct 605 GCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTC 664 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || |||||||| Sbjct 665 AACGTTTTGACGAAAATCTGCAT 687 >seq97776 Length=741 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| |||||||| || ||||| | ||| || || || ||| ||| ||| Sbjct 150 TGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTTACGTTCTCGATGGTG 91 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| || | |||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 90 TCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGAGTCTTCACGAAGATCTGC 31 Query 95006 AT 95007 || Sbjct 30 AT 29 >seq29780 Length=3062 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCT 94862 |||||||| || || || || | ||||||||| |||| || || || ||||||| Sbjct 30 TGCAAAGTCGACTCTTTCTGTATGTTATAATCCG--ATAGAGTGCGACCGTCTTCCAGCT 87 Query 94863 GTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 | || ||| |||| ||||| | ||||||||||| || || ||||||||||| | || | Sbjct 88 GCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCT 147 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | ||||||||| ||| || || | || || || | ||||| || || || | Sbjct 148 TCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCG 207 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGC 95009 | | |||||| || || || ||||||| Sbjct 208 TCAAAGTTTTGACGAAAATTTGCATGC 234 >seq76917 Length=1040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | | ||||||||| || ||||||||||||||||| | ||| || ||||| ||| Sbjct 401 AAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCCTTCACG 342 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||||| || || || | ||||||||||| || || | ||| ||| Sbjct 341 TTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAAGTCTTC 282 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 281 ACGAAGATCTGCAT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447571687020360