Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq60488 188 1e-43 seq4700 179 6e-41 seq42851 174 2e-39 seq48924 163 4e-36 seq39181 163 4e-36 seq124326 147 3e-31 seq102592 141 1e-29 seq88506 141 1e-29 seq111310 109 9e-20 seq277 102 1e-17 seq72186 98.7 2e-16 >seq60488 Length=1427 Score = 188 bits (208), Expect = 1e-43 Identities = 199/262 (76%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || || |||||||| ||||| |||||||| || || Sbjct 983 CGCGAAGCGTCATCGCAAGGTTCTCCGCGACAACATCCAGGGAATTACCAAGCCGGCGAT 1042 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| ||||||||||| || ||||| |||| || | |||| || || | Sbjct 1043 CCGTCGTCTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAAAC 1102 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 1103 TCGTGGTGTGCTGAAGGCGTTCCTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGA 1162 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||| || | |||||| | |||||||| ||| ||| ||||| Sbjct 1163 GCACGCGAAACGCAAGACTGTTACTGCGATGGATGTGGTCTATGCTCTGAGACGCCAAGG 1222 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 ||||| | || ||||| ||| Sbjct 1223 CCGTACCCTGTACGGTTTCGGA 1244 >seq4700 Length=9809 Score = 179 bits (198), Expect = 6e-41 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| || || |||||||| || |||||||||||||| ||| Sbjct 1665 GCGAAGCGTCATCGCAAGGTTCTCCGCGACAACATCCAGGGGATCACCAAGCCAGCGATC 1724 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| ||||||||||| || ||||| |||| || | |||| || || | Sbjct 1725 CGTCGTTTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCGGTCTCATCTACGAGGAAACC 1784 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | ||| ||| |||| ||| || || ||| |||| Sbjct 1785 CGTGGTGTGCTGAAGGTGTTCTTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAG 1844 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||| ||| | |||||| | |||||||| ||| ||| |||||| Sbjct 1845 CACGCGAAGCGCAAGACTGTTACCGCAATGGATGTGGTCTATGCTCTGAGACGCCAAGGC 1904 Query 16673 CGTA 16676 |||| Sbjct 1905 CGTA 1908 >seq42851 Length=2132 Score = 174 bits (192), Expect = 2e-39 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| ||| || ||||||||||| || |||| ||||||||| ||| Sbjct 146 GCGAAACGTCATCGCAAGGTTCTCCGCGATAACATCCAGGGGATCAGCAAGCCAGCGATC 205 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| ||||||||||| || ||||| |||| || | |||| || || | | Sbjct 206 CGCCGTTTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCGGTCTCATCTACGAGGAAACT 265 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 266 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAG 325 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| |||||||| || | ||||| | |||||||| ||| ||| |||||| Sbjct 326 CACGCGAAACGCAAGACTGTTACTGCAGTGGATGTGGTCTATGCTCTGAGACGCCAAGGC 385 Query 16673 CGTA 16676 |||| Sbjct 386 CGTA 389 >seq48924 Length=1842 Score = 163 bits (180), Expect = 4e-36 Identities = 184/245 (75%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| || || |||||||| |||||||||||||||| ||| Sbjct 931 GCGAAGCGTCATCGCAAGGTTCTCCGCGACAACATCCAGGGAATCACCAAGCCAGTGATC 872 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| ||||||||||| || ||||| |||| | || || | || || | | Sbjct 871 CGTCGTCTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCAGTTTCATCCACGAGGAAACT 812 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || || ||| ||| |||| ||| || || ||| |||| Sbjct 811 CGTGGTGTGCTGAAGGTGTTACTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAG 752 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA-AACGTCAAGG 16671 ||||| || | |||||||| ||| | |||||| | |||||||| ||| ||| | | | Sbjct 751 CACGCGAAGCACAAGACTGTTACCGCAATGGATGTGGTCTATGCTCTGACGACGCCGAAG 692 Query 16672 CCGTA 16676 ||||| Sbjct 691 CCGTA 687 >seq39181 Length=2342 Score = 163 bits (180), Expect = 4e-36 Identities = 184/245 (75%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| || || |||||||| |||||||||||||||| ||| Sbjct 2197 GCGAAGCGTCATCGCAAGGTTCTCCGCGACAACATCCAGGGAATCACCAAGCCAGTGATC 2138 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| ||||||||||| || ||||| |||| | || || | || || | | Sbjct 2137 CGTCGTCTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCAGTTTCATCCACGAGGAAACT 2078 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || || ||| ||| |||| ||| || || ||| |||| Sbjct 2077 CGTGGTGTGCTGAAGGTGTTACTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAG 2018 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA-AACGTCAAGG 16671 ||||| || | |||||||| ||| | |||||| | |||||||| ||| ||| | | | Sbjct 2017 CACGCGAAGCACAAGACTGTTACCGCAATGGATGTGGTCTATGCTCTGACGACGCCGAAG 1958 Query 16672 CCGTA 16676 ||||| Sbjct 1957 CCGTA 1953 >seq124326 Length=528 Score = 147 bits (162), Expect = 3e-31 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 16438 GCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 ||||||||||| ||| ||| | || |||||||| |||||||| ||||||| ||||||| Sbjct 348 GCGTCATCGCAAGAT-TCTCCACGACAACATCCAGGGAATCACGAAGCCAGTGATCCGTC 290 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 ||||||| ||||||||||| || ||||| |||| || | | || || || | ||||| Sbjct 289 GTCTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCGGTCTCATGTACGAGGAAACTCGTG 230 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| ||||| | ||||| ||| | | ||| ||| || || ||| |||||||| Sbjct 229 GTGTGCTGAAGGTGTTCCTGGAGAACATCGTCCGTGACGCGGTCACTTATTGCGAGCACG 170 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 | || || ||||| |||||| | |||||| | ||| |||| Sbjct 169 CAAAGCGCAAGACCGTCACCGCAATGGATGTGGTCCATGC 130 >seq102592 Length=693 Score = 141 bits (156), Expect = 1e-29 Identities = 176/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 16438 GCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 ||||| ||||| ||| || || |||||||| |||||| ||||||||| | |||| | Sbjct 302 GCGTCGTCGCAAGGTTCTCCGCGACAACATCCAGGGAATCGCCAAGCCAGTGACCCGTTG 361 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 |||||| ||||||||||| || ||||| |||| | || || | || || | ||||| Sbjct 362 TCTGGCGCGTCGTGGTGGTGTGAAGCGCATCTCCAGTTTCATCCACGAGGAAACTCGTGG 421 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||||| | || || ||| ||| |||| ||| || || ||| ||||||||| Sbjct 422 TGTGCTGAAGGTGTTACTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAGCACGC 481 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA-AACGTCAAGGCCGTA 16676 || | |||||||| ||| | |||||| | |||||||| ||| ||| | | |||||| Sbjct 482 GAAGCACAAGACTGTTACCGCAATGGATGTGGTCTATGCTCTGACGACGCCGAAGCCGTA 541 >seq88506 Length=856 Score = 141 bits (156), Expect = 1e-29 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || |||||||||| | || || || || |||||||| ||||||||||||||||| | Sbjct 360 CGCGAAACGTCATCGCA-AGCTGTTGCGCGACAACATCCAGGGAATCACCAAGCCAGCAA 302 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| ||||||||||||||||| || |||||| |||| || | ||||||| || Sbjct 301 TACGTCGGCTGGCTCGTCGTGGTGGCGTGAAGCGTATCTCAGGCCTCATCTATGAGGAAG 242 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||||| || | ||| ||| | || ||||| | || || ||| || Sbjct 241 TTCGTGGCGTCCTCAAGGCGTTCTTGAATCAAATTATCTGCAACGCGGTCTGCTACTGCG 182 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || | || ||||| ||||| | |||| |||||| ||| ||| |||||||| Sbjct 181 AGCATGCGTATCGCAAGACAGTCACGGCAGTGGACGTCGTCTTTGCTCTGAGACGTCAAG 122 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | |||| | ||||| ||||| Sbjct 121 GTCGTACCCTGTATGGCTTTGG 100 >seq111310 Length=622 Score = 109 bits (120), Expect = 9e-20 Identities = 179/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 16438 GCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 ||||||||||||| || | | | ||||| ||| |||||| ||||||| Sbjct 103 GCGTCATCGCAGATTCCCCCTGCGGCAACAT-----------CCAGGCCAGCAATCCGTC 151 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 || |||||||| | ||||| | |||||| | ||||| | |||||||| || ||| | | Sbjct 152 GTTTGGCTCGTTGCGGTGGCTTGAAGCGTATTTCTGGCCTCGTCTATGAGGAAATTTGCG 211 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 |||| ||||| ||||| || ||| ||| |||||| || || |||||| Sbjct 212 ATGTGCTGAAGGCATTCCTGGAGGGCGTCATCGGTGATGCGGTCACTTAATGCGAGCATA 271 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||| || ||||||||| | |||||| | ||||| || ||| ||| |||| |||| Sbjct 272 CTAAGCGCAAGACTGTCTTTGCAATGGATGTAGTCTAAGCTCTGAGACGCTAAGGACGTA 331 Query 16677 AGATTTATGGTTTTGGAAG 16695 | || || |||||||| Sbjct 332 CACTGTACGGGTTTGGAAG 350 >seq277 Length=24757 Score = 102 bits (112), Expect = 1e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 16439 CGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 |||||||||| | | || || || |||||||| |||||||| |||||||| || || || Sbjct 20280 CGTCATCGCA-AGGTGTTGCGCGACAACATCCAGGGAATCACAAAGCCAGCAATACGACG 20222 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||||||||||| ||||| || |||||| |||| || | ||||||| || |||||| Sbjct 20221 GCTGGCTCGTCGCGGTGGCGTGAAGCGTATCTCAGGCCTCATCTATGAGGAAGTTCGTGG 20162 Query 16558 TGTTTTGAAG 16567 || |||||| Sbjct 20161 CGTCTTGAAG 20152 >seq72186 Length=1134 Score = 98.7 bits (108), Expect = 2e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 16439 CGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 |||||||||| ||| || ||||||||||| || |||| ||||||||| | || ||| Sbjct 536 CGTCATCGCAAGGTTCTCCGCGATAACATCCAGGGGATCAGCAAGCCAGCGACTCGCCGT 595 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 |||| ||||||||||| || ||||| | || || | |||| | | | |||| | Sbjct 596 TTGGCGCGTCGTGGTGGTGTGAAGCGCATTTCCGGTCTCATCTACGGGAAAACCCGTGGT 655 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 || ||||| | ||||| ||| ||| |||| ||| || || ||| ||||||||| Sbjct 656 GTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACTTATTGCGAGCACGC 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78957802066893