Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1136 93.3 1e-13 seq56994 84.2 6e-11 >seq1136 Length=16860 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 111318 CCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTT 111377 ||| | || |||||||| || || ||||| ||| || | |||||||| ||||||||| Sbjct 16492 CCAGTACTGACAACAAAACGGGTCTACTGGAAAGGAGTTCTGGAAGAACTGCTGTGGTTT 16433 Query 111378 ATTCGCGGAAGTACAAATGCAAATGAACTTG-CAGCAAAAAATGTAAAAATTTGGGATGG 111436 || | || ||| |||||||| | | ||| | | ||| ||| || |||||||||| Sbjct 16432 ATCAGGGGCGATACGAATGCAAA-GCATTTGTCTGACAAAGGTGTTAAGATTTGGGATGC 16374 Query 111437 AAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCG-ACAACGAAGAAGGTGATC 111495 |||||| ||||| | || || || | |||| ||| || || | ||||||| || Sbjct 16373 AAATGGGTCACGGCAGTTCCTGGACAAACTTGG-CTTCACGGACCGCCAAGAAGGCGACT 16315 Query 111496 TCGGACCAGTTTACGGATTTCA 111517 | ||||||||||| || || || Sbjct 16314 TAGGACCAGTTTATGGCTTCCA 16293 >seq56994 Length=1537 Score = 84.2 bits (92), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 65829 AAAATTATCGGCATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTC 65888 ||||||||| || | ||||| || | | ||| ||| |||||| | || || || Sbjct 127 AAAATTATC-----ACCTTAACTGTACCAGCTGTCCAAGTGAGTTACGTACTGTACCATC 181 Query 65889 ATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTT 65948 ||||||| |||| | ||| | || || | |||| |||||||||||||| ||||| Sbjct 182 ATAATTGACCATAACACTTTCCATAGCTTTGATTAGACGACGCTGGATGTAAC--CTGTT 239 Query 65949 T--GCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAA 66006 | || || || || || ||||||| ||||||||||| || ||| ||| || || Sbjct 240 TCGGCTGTCTTCACTGCTGTATCAATAAGACCTTCACGGCCACCCATCGCATGGAAAAAG 299 Query 66007 AACTCAGTCGGTTGTAGACCAAGCATAAACGAATTTTGAATGTAACCATTTG 66058 ||||| | || ||||| || | ||||||| || | |||| |||| Sbjct 300 AACTCGGATGGCGTCAGACCGGCCAAGTATGAATTTTCAACGAAACCTTTTG 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301209403709582