Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq29780 109 5e-19 seq65209 107 2e-18 seq32511 84.2 2e-11 >seq29780 Length=3062 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||||||||| | || || || | ||| | |||||||| || || ||||| ||||| Sbjct 4 AGCCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCG 63 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| ||| || ||||||||||| || | ||||| |||||||| || || | Sbjct 64 ATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGG 123 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||||||||| ||| ||| ||||| | || | ||||| | | || | Sbjct 124 GGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCA 183 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | |||||| |||||||| |||||| Sbjct 184 CTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCATG 233 >seq65209 Length=1292 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | ||| | ||||| |||||||| ||||| ||||| | Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| | ||||||||| || | || | ||| ||||| ||||||||| Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| ||| ||| | | ||| | || || | | ||| | Sbjct 581 ATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACT 640 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | ||||| |||||||||||||| Sbjct 641 TCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq32511 Length=2827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 131009 CACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCA 131068 ||||||| | ||| || | | ||| | | |||| |||||||| ||||| |||| | Sbjct 1134 CACCGCGAAGACGAAGGATGAGATGCAAG-TCGATTCCTTTTGGATGTTAAAATCCGATA 1192 Query 131069 TGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGA 131128 ||||| |||||| | ||||||||| || | |||| ||| |||||||||||| ||| Sbjct 1193 AAGTGCGATCGTCCTCCAACTGCTTGCCGGCAAAAATTAGACGTTGCTGGTCCGGAAGGA 1252 Query 131129 TTCCTTCTTTG 131139 | ||||||||| Sbjct 1253 TACCTTCTTTG 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471255213555840