Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq122085 102 5e-17 seq29780 100 2e-16 seq56406 95.1 8e-15 seq41766 93.3 3e-14 seq3954 89.7 3e-13 seq3093 86.0 4e-12 seq934 86.0 4e-12 seq20393 82.4 5e-11 seq15923 82.4 5e-11 >seq122085 Length=544 Score = 102 bits (112), Expect = 5e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||| |||||||||||||||||||||||| ||||||||||||| || | Sbjct 1 CTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGTGGCCGT 60 Query 20013 ATTTAGCCTTA 20023 ||||||||||| Sbjct 61 ATTTAGCCTTA 71 >seq29780 Length=3062 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| || || || || ||||| || | | || |||| || | || || |||||||| Sbjct 41 CTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAA 100 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 |||| ||| || ||||| | ||||| ||||||||||||| || || ||| || || Sbjct 101 AATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTT 160 Query 38246 CTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCA 38304 | || ||||| | || ||| ||||| || || || || || |||||||| ||||| | Sbjct 161 TTCGATCGTATC-CGACGCTTCCACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGA 219 Query 38305 CGAATATCTGCATG 38318 |||| || |||||| Sbjct 220 CGAAAATTTGCATG 233 >seq56406 Length=1558 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||| | |||||| ||||||||||||||||||| || |||||||| Sbjct 905 CTCTCTCTTCAAAGTTCACTGCAACTTGCCCTCACGGTACTTGTTCGTTACCGGTCTCGT 964 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 965 GGCCGTATTTAGCCTTA 981 >seq41766 Length=2190 Score = 93.3 bits (102), Expect = 3e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||| |||||||||||||||||||||||| ||||||||||||| || | Sbjct 1 CTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGTGGCCGT 60 Query 20013 ATTTAG 20018 |||||| Sbjct 61 ATTTAG 66 >seq3954 Length=10608 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011 |||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| Sbjct 7982 TCTTTAAAGTTCTTTGCAACTTTCCCTCACGATACTTGTTTGCTATCGGTCTCGCGGCCT 7923 Query 20012 TATTTAGCCTTA 20023 |||||| |||| Sbjct 7922 CATTTAGTCTTA 7911 >seq3093 Length=11715 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| | |||| |||||| ||| ||| ||||||||| ||||||||| ||| Sbjct 1 CTCTCTCTTCAAAATCCTTTGCAACTTCCCCCCACAGTACTTGTTTGCTATCGGTTTCGT 60 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 61 GGCCGTATTTAGCCTTA 77 >seq934 Length=17835 Score = 86.0 bits (94), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| |||||||| ||||||||||| ||||| ||||| | || || || ||||| Sbjct 5912 CCGACCAAATATTTTGGGTGCGAACTGGGCGCACAGACTAACTTCGACATGAAGAACGAA 5971 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || |||||||| ||||| || || | || || ||||| || | |||||||| || Sbjct 5972 CGTTTCATCGTGAACGGTGAACACGACGCGGCGAAACTGCAAGAAATCCTTGACGGTTTC 6031 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 || || || || || ||| | |||||| || ||||| ||| Sbjct 6032 ATCAAGAAATTCGTCCTTTGTGCAGCATGCGAGAATCCGGAAACC 6076 >seq20393 Length=4198 Score = 82.4 bits (90), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 6/82 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||| ||||||| ||||||||||| |||||| |||||| ||||||||||| Sbjct 1688 AAGTCCGTTTTCTTGGCTTTGGTTTCGCTACATAGTAAATAGGGACAGTGGTAATCTCGT 1629 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 |||||| ||| |||||||||| Sbjct 1628 TAATCCAGTCA-GCGCGTCACT 1608 >seq15923 Length=5009 Score = 82.4 bits (90), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||| |||||||||| ||||||| |||||||||||||||| ||||| ||| ||| Sbjct 760 CTCTCTCTTTAAAGTTCTTTGCAACTTTTCCTCACGGTACTTGTTTGCTATTGGT-TCGT 702 Query 20007 GGTAATATTTAGCCT 20021 ||| | |||| ||| Sbjct 701 GGTCGTGTTTAACCT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334423045418231