Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq76917 107 2e-18 seq65209 104 2e-17 seq29780 104 2e-17 seq14519 89.7 4e-13 >seq76917 Length=1040 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||||||| | || || ||| | ||| Sbjct 268 ATGCAGATCTTCGTGAAGACTTTGACCGGTAAAACCATCACACTGGAGGTTGAGGCATCT 327 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| |||| || || | ||| ||||||||||| |||||||| || || Sbjct 328 GACACCATCGAGAACGTGAAGGCGAAGATTCA-GGACAAAGAAGGTATTCCACCGGATCA 386 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 || ||| |||| || || || Sbjct 387 GCAACGGCTTATCTTCGCAGG 407 >seq65209 Length=1292 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || | ||||| | ||||||||| | || Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| |||||||| || || || || || || Sbjct 627 GACACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 568 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||||||||||||||| || || || || | ||||||| || ||||| || Sbjct 567 CAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAAC 508 Query 25179 ATTCAAAAAGAATCCAC 25195 || ||||| ||||| || Sbjct 507 ATCCAAAAGGAATCGAC 491 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| || | |||||| | || |||||| |||| Sbjct 1100 ATGCAAATTTTCGTGAAGACTCTCACCGGCAAGACAATCACATTGGAGGTGGAGGCGTCC 1041 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| ||||||||||| ||||| || || || Sbjct 1040 GACACGATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 981 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| |||| ||||| || Sbjct 980 CAGCGACTTATCTTTGCTGG 961 >seq29780 Length=3062 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || || | ||||| | |||||||| |||| Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||||||||| || || || || || Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | ||||| | ||||||| | ||||| || Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| || || Sbjct 52 ATACAGAAAGAGTCGAC 36 >seq14519 Length=5345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||||||||| || ||| ||||||| | ||||| || |||| Sbjct 4480 ATGCAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCA 4539 Query 25059 GACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| || |||| || | ||| ||||| || || |||||||| || || Sbjct 4540 GATACCATCGAAAATGTGAAAGCGAAGATTCA-GGACAAGGAGGGTATTCCACCGGATCA 4598 Query 25118 ACAGCGGATTATTTTTGC 25135 |||||| |||| ||||| Sbjct 4599 GCAGCGGCTTATCTTTGC 4616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432649890564815