Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq65209 129 5e-25 seq29780 104 2e-17 seq14519 98.7 8e-16 seq73431 89.7 4e-13 seq97776 82.4 6e-11 seq76917 82.4 6e-11 >seq65209 Length=1292 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| || || || || || ||||||| |||||||| | | Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||| |||||||| || || ||||| Sbjct 627 GACACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 568 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||||||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 567 CAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAAC 508 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||| ||||| || | ||| | || | || | ||||| |||| Sbjct 507 ATCCAAAAGGAATCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGGTT 459 >seq29780 Length=3062 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || || ||| ||||| | ||||||||| | | Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || || ||||| || || || || || ||||| Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||| | || || ||||| | || ||||| ||| Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 52 ATACAGAAAGAGTCGAC 36 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||||||| | ||||| ||||| ||||||| |||||||| | || Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||||| |||||||| || ||||| || ||||| Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| || || || Sbjct 527 CAGCGTCTTATTTTCGCTGG 508 >seq14519 Length=5345 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || ||||| |||| || ||||| ||| | | Sbjct 4480 ATGCAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCA 4539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 4540 GATACCATCGAAAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAG 4599 Query 22339 CAACGTCTTATATTTGC 22355 || || ||||| ||||| Sbjct 4600 CAGCGGCTTATCTTTGC 4616 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| ||||| ||||||||| ||||| | || || || | | Sbjct 3910 ATGCAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCG 3969 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct 3970 GATACGATTGAAAATGTTAAAGCGAAAATTCAGGACAAAGAGGGCATCCCTCCGGATCAG 4029 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 4030 CAGCGCCTCATCTTTGCTGG 4049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22236 AACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATAT 22295 |||| | |||||||||||| ||||||| |||||||| || | |||||| | || || | Sbjct 2523 AACTCTCACCGGTAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGT 2582 Query 22296 CAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGC 22355 || || || ||||| |||||||| || ||||| |||||||| ||||| || || || Sbjct 2583 GAAGGCGAAGATACAAGATAAGGAGGGAATCCCACCAGATCAACAGCGTCTCATCTTCGC 2642 Query 22356 CGG 22358 || Sbjct 2643 TGG 2645 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || ||||| | || || ||||| || | | Sbjct 4969 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATTACGCTGGAAGTCGAGGCATCA 5028 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 5029 GATACCATCGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAG 5088 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| ||||| || Sbjct 5089 CAGCGGCTTATCTTTGCTGG 5108 >seq73431 Length=1108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || || ||| ||||| ||||||||||| | | Sbjct 566 ATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCG 507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || |||| || || || |||| || || || || || ||||| Sbjct 506 GATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAG 447 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||||| || || ||||| | || ||||| ||| Sbjct 446 CAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAAC 387 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || || | | || ||| ||||| | || | || || ||| Sbjct 386 ATCCAGGAGAAGTCGACCTTACATCTCGTCCTTCGCTTTCGC 345 >seq97776 Length=741 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || ||||| |||| || ||||| ||| | | Sbjct 29 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCT 88 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 89 GACACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 148 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| || || || Sbjct 149 CAGCGGCTTATCTTCGCAGG 168 >seq76917 Length=1040 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| |||| || || || |||| || |||||||| | || Sbjct 607 ATGCAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCC 666 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||| ||||||||||||||||| |||||||| ||||| Sbjct 667 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAG 726 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| || || || Sbjct 727 CAGCGACTTATCTTCGCAGG 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419071173030565