Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 129 5e-25
seq29780 104 2e-17
seq14519 98.7 8e-16
seq73431 89.7 4e-13
seq97776 82.4 6e-11
seq76917 82.4 6e-11
>seq65209
Length=1292
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || ||||| || || || || || ||||||| |||||||| | |
Sbjct 687 ATGCAGATTTTCGTCAAAACGTTGACGGGCAAGACAATCACTCTGGAAGTGGAGGCATCG 628
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || ||||| |||||||| || || |||||
Sbjct 627 GACACCATTGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 568
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| ||||||||||| ||||| ||||| ||||| | || ||||| |||
Sbjct 567 CAACGTCTTATTTTTGCCGGCAAGCAGTTGGAGGACGGTCGCACTTTGTCGGATTATAAC 508
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447
|| ||||| ||||| || | ||| | || | || | ||||| ||||
Sbjct 507 ATCCAAAAGGAATCGACTTTGCATCTCGTCCTTCGCCTTCGCGGTGGTT 459
>seq29780
Length=3062
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || |||||||| || || || ||| ||||| | ||||||||| | |
Sbjct 232 ATGCAAATTTTCGTCAAAACTTTGACGGGGAAGACGATCACTTTGGAAGTGGAAGCGTCG 173
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | |||| || || || ||||| || || || || || |||||
Sbjct 172 GATACGATCGAAAACGTCAAGGCGAAGATCCAGGACAAAGAAGGCATCCCCCCAGATCAG 113
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||||||||| ||| | || || ||||| | || ||||| |||
Sbjct 112 CAGCGCTTAATTTTTGCCGGCAAGCAGCTGGAAGACGGTCGCACTCTATCGGATTATAAC 53
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || ||||| || ||
Sbjct 52 ATACAGAAAGAGTCGAC 36
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||||||||||||| | ||||| ||||| ||||||| |||||||| | ||
Sbjct 647 ATGCAGATTTTTGTTAAAACTCTGACCGGCAAAACAATCACTCTGGAAGTGGAGCCGTCC 588
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | || || ||||| |||||||| || ||||| || |||||
Sbjct 587 GACACGATCGAGAACGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 528
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| |||||||| || || ||
Sbjct 527 CAGCGTCTTATTTTCGCTGG 508
>seq14519
Length=5345
Score = 98.7 bits (108), Expect = 8e-16
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| || || ||||| |||| || ||||| ||| | |
Sbjct 4480 ATGCAGATATTCGTCAAGACTTTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCA 4539
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | ||| || ||||| |||||||||||||||||||| |||||
Sbjct 4540 GATACCATCGAAAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAG 4599
Query 22339 CAACGTCTTATATTTGC 22355
|| || ||||| |||||
Sbjct 4600 CAGCGGCTTATCTTTGC 4616
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| ||||| ||||| ||||||||| ||||| | || || || | |
Sbjct 3910 ATGCAAATTTTTGTAAAAACCTTAACGGGTAAAACGATCACTTTGGAGGTAGAGGCATCG 3969
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||| ||||| ||||| || || || |||||
Sbjct 3970 GATACGATTGAAAATGTTAAAGCGAAAATTCAGGACAAAGAGGGCATCCCTCCGGATCAG 4029
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || || || ||||| ||
Sbjct 4030 CAGCGCCTCATCTTTGCTGG 4049
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 22236 AACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATAT 22295
|||| | |||||||||||| ||||||| |||||||| || | |||||| | || || |
Sbjct 2523 AACTCTCACCGGTAAAACGATCACTCTGGAAGTGGAGGCCTCGGATACCATCGAGAATGT 2582
Query 22296 CAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGC 22355
|| || || ||||| |||||||| || ||||| |||||||| ||||| || || ||
Sbjct 2583 GAAGGCGAAGATACAAGATAAGGAGGGAATCCCACCAGATCAACAGCGTCTCATCTTCGC 2642
Query 22356 CGG 22358
||
Sbjct 2643 TGG 2645
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || ||||| | || || ||||| || | |
Sbjct 4969 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATTACGCTGGAAGTCGAGGCATCA 5028
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | ||| || ||||| |||||||||||||||||||| |||||
Sbjct 5029 GATACCATCGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCGGATCAG 5088
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || ||||| ||||| ||
Sbjct 5089 CAGCGGCTTATCTTTGCTGG 5108
>seq73431
Length=1108
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || |||||||| || || || ||| ||||| ||||||||||| | |
Sbjct 566 ATGCAAATTTTCGTCAAAACTTTGACAGGGAAGACGATCACTTTTGAAGTGGAAGCGTCG 507
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || |||| || || || |||| || || || || || |||||
Sbjct 506 GATACGATCGAAAGCGTCAAGGCGAAGATCCAGCACAAAGAAGGCATCCCCCCAGATCAG 447
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||| ||||| ||||| || || ||||| | || ||||| |||
Sbjct 446 CAGAGCTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGTCGCACTCTATCGGATTATAAC 387
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440
|| || | | || ||| ||||| | || | || || |||
Sbjct 386 ATCCAGGAGAAGTCGACCTTACATCTCGTCCTTCGCTTTCGC 345
>seq97776
Length=741
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || ||||| |||| || ||||| ||| | |
Sbjct 29 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAAACCATCACGCTGGAAGTCGAAGCGTCT 88
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | ||| || ||||| |||||||||||||||||||| |||||
Sbjct 89 GACACCATCGAGAACGTAAAAGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 148
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || ||||| || || ||
Sbjct 149 CAGCGGCTTATCTTCGCAGG 168
>seq76917
Length=1040
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| |||| || || || |||| || |||||||| | ||
Sbjct 607 ATGCAGATCTTCGTGAAGACTCTAACTGGCAAGACAATCACACTGGAAGTGGAGGCGTCC 666
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | || ||| ||||||||||||||||| |||||||| |||||
Sbjct 667 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCGGATCAG 726
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || ||||| || || ||
Sbjct 727 CAGCGACTTATCTTCGCAGG 746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419071173030565
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |