Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq65209 143 5e-29 seq29780 143 5e-29 seq73431 122 2e-22 seq97776 118 2e-21 seq76917 118 2e-21 seq32511 114 2e-20 seq30912 113 8e-20 seq14519 107 4e-18 seq19432 93.3 8e-14 seq112560 89.7 9e-13 seq82153 89.7 9e-13 seq27460 87.8 3e-12 seq13140 86.0 1e-11 >seq65209 Length=1292 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | || | || || || ||||||||||||||||| || Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || |||||||| ||||| || || || | ||| || || || || Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || ||||| ||||| ||| ||| |||||||| | || || ||| Sbjct 581 ATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACT 640 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || ||||| | || |||||||| |||||||| Sbjct 641 TCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||| | || || || || |||| || || || || ||||||||||| ||||| || ||| Sbjct 955 TGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATC 1014 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 |||||||||||| || || ||||| | | || || ||||| ||||| || || || Sbjct 1015 TTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCG 1074 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| || ||||| Sbjct 1075 GTGAGAGTCTTCACGAAAATTTGCAT 1100 >seq29780 Length=3062 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | || | || |||||||| || ||||||||||| || Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| ||||| || || | | || || || || || Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| ||||||||| ||||| || || | | ||| ||| Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||| | || |||||||| || ||||| Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||| | || ||||| || || | || || || || ||||||||||||||||| |||||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || ||||| ||| |||||| ||||| | | || ||||||| ||||| ||||| || Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || |||||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 >seq73431 Length=1108 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68240 GCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGT 68299 ||||| ||| | || | |||| || |||| | |||||||||||||| || || || Sbjct 345 GCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGT 404 Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 | || ||||| |||||||| || || || || | || || || || || || ||||| Sbjct 405 GCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCC 464 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 ||| |||| || ||||| ||||||||| ||||| || || | | ||| ||||| || Sbjct 465 TTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAA 524 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || | || |||||||| || ||||| Sbjct 525 AGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq97776 Length=741 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || |||||||| || |||||||| |||||||| || Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||||||||| | | ||| ||||||| ||||||||||| || || || Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 48 GTCTTCACGAAGATCTGCAT 29 >seq76917 Length=1040 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | ||| || || |||||||| ||||| ||||| |||||||| ||| Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||||||||| | || || || |||| ||||||||||| || || | Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 287 GTCTTCACGAAGATCTGCAT 268 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| || || || |||||||| || ||||||||||||||||||||| Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||| ||||| | | || ||||||| ||||| || || || || || Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 626 GTCTTCACGAAGATCTGCAT 607 >seq32511 Length=2827 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 |||| || |||| ||||| || |||||||| || |||||||| |||||||||||||||| Sbjct 1584 CGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTGA 1643 Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 || |||||| ||||| | | || | ||||| ||||| ||||| || || || |||| Sbjct 1644 CGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGAGTCT 1703 Query 68446 TGACGAATATCTGCAT 68461 | ||||| |||| ||| Sbjct 1704 TCACGAAGATCTACAT 1719 >seq30912 Length=2956 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| ||||| || |||||||| || |||||||| |||||||||||| Sbjct 1559 CCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCC 1618 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||| ||||| | | || | ||||| ||||| ||||| || || || Sbjct 1619 TTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGA 1678 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||| ||| Sbjct 1679 GTCTTCACGAAGATCTACAT 1698 >seq14519 Length=5345 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || |||||||| || |||||||| |||||||| || || || |||||||| Sbjct 4601 TGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTCACATTTTCGATGGTA 4542 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | ||| ||||||| ||||||||||| || || | |||||||||||||||||| Sbjct 4541 TCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTCTTGACGAATATCTGC 4482 Query 68460 AT 68461 || Sbjct 4481 AT 4480 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 1407 CCAGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCT 1348 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||||||| || | | || ||||||| ||||| |||||||| |||||| Sbjct 1347 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTTCCGGTGAGG 1288 Query 68442 GTC 68444 ||| Sbjct 1287 GTC 1285 >seq19432 Length=4349 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || ||||| |||||||||||||| || ||||||||||| || ||| ||||| Sbjct 1935 TGCTGATCCGGTGGTATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTA 1994 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || || |||| ||||| ||||| || ||||| || || || | |||||| Sbjct 1995 TCCGATGCCTCCACCTCCAGAGTGATCGTTTTGCCAGTGAGCGTTTTCACATAAATCTGC 2054 Query 68460 ATTA-TGCTATTATAC 68474 || | ||| || |||| Sbjct 2055 ATGATTGCAATGATAC 2070 >seq112560 Length=614 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||||||||| | || ||||||| || | |||| |||||||||| Sbjct 359 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 300 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 299 CCCGCATCGGGC 288 >seq82153 Length=950 Score = 89.7 bits (98), Expect = 9e-13 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | | | || ||||| || || ||||| ||||| || Sbjct 129 CCACCGCGAAGGCGAAGGACGAGATACAAGGTCGACTCGTTCTGTATGTTGTAATCCGAT 188 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||| |||| | ||| || || || || |||| || || Sbjct 189 AGAGTATGACTGTCTTCCAACAGCTTGCGGGCAAAAATTAGGTACTGCTGGTGTGGGGGG 248 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 | |||||| ||||| || ||||| ||||||||| ||||| || || | | ||| ||| Sbjct 249 AAGCCTTCTTTGTCCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACT 308 Query 68415 TCCAAGGTGATGGTTTT---TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || |||| | | | ||||| || || ||||| Sbjct 309 TCCAGAGTGATCGTCTTCCCTCCCATCACAATTTTGACAAAAATTTGCAT 358 >seq27460 Length=3287 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | ||| || || || || |||||||||||||| ||||| ||| Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | ||| || |||||||| || | ||||| || || | ||||| || || || || Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| || ||||| Sbjct 2355 AGCGTCTTCACGAAGATTTGCAT 2377 >seq13140 Length=5705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||| Sbjct 2467 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCG 2408 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 2407 AGCCCCGCATCGGGC 2393 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 3021 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2962 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 2961 CCCGCATCGGGC 2950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920143184527720