Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 143 5e-29
seq29780 143 5e-29
seq73431 122 2e-22
seq97776 118 2e-21
seq76917 118 2e-21
seq32511 114 2e-20
seq30912 113 8e-20
seq14519 107 4e-18
seq19432 93.3 8e-14
seq112560 89.7 9e-13
seq82153 89.7 9e-13
seq27460 87.8 3e-12
seq13140 86.0 1e-11
>seq65209
Length=1292
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | || | || | || || || ||||||||||||||||| ||
Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || |||||||| ||||| || || || | ||| || || || ||
Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| || ||||| ||||| ||| ||| |||||||| | || || |||
Sbjct 581 ATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACT 640
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || || ||||| | || |||||||| ||||||||
Sbjct 641 TCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375
||| | || || || || |||| || || || || ||||||||||| ||||| || |||
Sbjct 955 TGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATC 1014
Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435
|||||||||||| || || ||||| | | || || ||||| ||||| || || ||
Sbjct 1015 TTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCG 1074
Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| ||||| || |||||
Sbjct 1075 GTGAGAGTCTTCACGAAAATTTGCAT 1100
>seq29780
Length=3062
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | || | || | || |||||||| || ||||||||||| ||
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| ||||| || || | | || || || || ||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| ||||| || ||||| ||||||||| ||||| || || | | ||| |||
Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || ||||| | || |||||||| || |||||
Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375
||| | || ||||| || || | || || || || ||||||||||||||||| ||||||
Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561
Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435
|| ||||| ||| |||||| ||||| | | || ||||||| ||||| ||||| ||
Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621
Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || || || ||||||||
Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647
>seq73431
Length=1108
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 68240 GCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGT 68299
||||| ||| | || | |||| || |||| | |||||||||||||| || || ||
Sbjct 345 GCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGT 404
Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359
| || ||||| |||||||| || || || || | || || || || || || |||||
Sbjct 405 GCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCC 464
Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419
||| |||| || ||||| ||||||||| ||||| || || | | ||| ||||| ||
Sbjct 465 TTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAA 524
Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || | || |||||||| || |||||
Sbjct 525 AGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566
>seq97776
Length=741
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | || || || |||||||| || |||||||| |||||||| ||
Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| |||||||||||| | | ||| ||||||| ||||||||||| || || ||
Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| ||||| ||||||||
Sbjct 48 GTCTTCACGAAGATCTGCAT 29
>seq76917
Length=1040
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | ||| || || |||||||| ||||| ||||| |||||||| |||
Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| |||||||||||| | || || || |||| ||||||||||| || || |
Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| ||||| ||||||||
Sbjct 287 GTCTTCACGAAGATCTGCAT 268
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || |||| || || || |||||||| || |||||||||||||||||||||
Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| |||||| ||||| | | || ||||||| ||||| || || || || ||
Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| ||||| ||||||||
Sbjct 626 GTCTTCACGAAGATCTGCAT 607
>seq32511
Length=2827
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385
|||| || |||| ||||| || |||||||| || |||||||| ||||||||||||||||
Sbjct 1584 CGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTGA 1643
Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445
|| |||||| ||||| | | || | ||||| ||||| ||||| || || || ||||
Sbjct 1644 CGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGAGTCT 1703
Query 68446 TGACGAATATCTGCAT 68461
| ||||| |||| |||
Sbjct 1704 TCACGAAGATCTACAT 1719
>seq30912
Length=2956
Score = 113 bits (124), Expect = 8e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || |||| ||||| || |||||||| || |||||||| ||||||||||||
Sbjct 1559 CCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCC 1618
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| |||||| ||||| | | || | ||||| ||||| ||||| || || ||
Sbjct 1619 TTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTAGA 1678
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| ||||| |||| |||
Sbjct 1679 GTCTTCACGAAGATCTACAT 1698
>seq14519
Length=5345
Score = 107 bits (118), Expect = 4e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
|| || || |||||||| || |||||||| |||||||| || || || ||||||||
Sbjct 4601 TGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTCACATTTTCGATGGTA 4542
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|||| | ||| ||||||| ||||||||||| || || | ||||||||||||||||||
Sbjct 4541 TCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTCTTGACGAATATCTGC 4482
Query 68460 AT 68461
||
Sbjct 4481 AT 4480
Score = 96.9 bits (106), Expect = 6e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| ||||| | |||||||| ||||| || || ||||| ||||| ||||| ||
Sbjct 1407 CCAGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCT 1348
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||||||||| || | | || ||||||| ||||| |||||||| ||||||
Sbjct 1347 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTTCCGGTGAGG 1288
Query 68442 GTC 68444
|||
Sbjct 1287 GTC 1285
>seq19432
Length=4349
Score = 93.3 bits (102), Expect = 8e-14
Identities = 103/136 (76%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
|| || || ||||| |||||||||||||| || ||||||||||| || ||| |||||
Sbjct 1935 TGCTGATCCGGTGGTATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTA 1994
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|| | || || || |||| ||||| ||||| || ||||| || || || | ||||||
Sbjct 1995 TCCGATGCCTCCACCTCCAGAGTGATCGTTTTGCCAGTGAGCGTTTTCACATAAATCTGC 2054
Query 68460 ATTA-TGCTATTATAC 68474
|| | ||| || ||||
Sbjct 2055 ATGATTGCAATGATAC 2070
>seq112560
Length=614
Score = 89.7 bits (98), Expect = 9e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||||||||| | || ||||||| || | |||| ||||||||||
Sbjct 359 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 300
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 299 CCCGCATCGGGC 288
>seq82153
Length=950
Score = 89.7 bits (98), Expect = 9e-13
Identities = 158/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | || | | | || ||||| || || ||||| ||||| ||
Sbjct 129 CCACCGCGAAGGCGAAGGACGAGATACAAGGTCGACTCGTTCTGTATGTTGTAATCCGAT 188
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| ||| |||| | ||| || || || || |||| || ||
Sbjct 189 AGAGTATGACTGTCTTCCAACAGCTTGCGGGCAAAAATTAGGTACTGCTGGTGTGGGGGG 248
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
| |||||| ||||| || ||||| ||||||||| ||||| || || | | ||| |||
Sbjct 249 AAGCCTTCTTTGTCCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACT 308
Query 68415 TCCAAGGTGATGGTTTT---TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || || |||| | | | ||||| || || |||||
Sbjct 309 TCCAGAGTGATCGTCTTCCCTCCCATCACAATTTTGACAAAAATTTGCAT 358
>seq27460
Length=3287
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || || | ||| || || || || |||||||||||||| ||||| |||
Sbjct 2235 TTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTTT 2294
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| ||| || |||||||| || | ||||| || || | ||||| || || || ||
Sbjct 2295 GTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGTT 2354
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|| ||||| ||||| || |||||
Sbjct 2355 AGCGTCTTCACGAAGATTTGCAT 2377
>seq13140
Length=5705
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512
|| ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||
Sbjct 2467 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCG 2408
Query 84513 AGCCCCACATCGGGC 84527
|||||| ||||||||
Sbjct 2407 AGCCCCGCATCGGGC 2393
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 3021 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2962
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 2961 CCCGCATCGGGC 2950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920143184527720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |