Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq29780 107 2e-18 seq14519 89.7 4e-13 seq65209 86.0 5e-12 >seq29780 Length=3062 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||||||| | || |||||||| || || |||||||||||||| ||||| |||||| Sbjct 506 TACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCG 565 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 |||| | || | ||||||| | || || |||| || | ||||||||||||| Sbjct 566 CCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCA 625 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||||| |||||||||||||| Sbjct 626 GAGTTTTAACAAAAATCTGCAT 647 >seq14519 Length=5345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 |||||| ||||||| ||||| || |||||||| ||||| |||||||| ||| ||| | Sbjct 4050 ACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAAT-TTTCG 3992 Query 114302 TTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 |||| | | ||||| || || | | || || |||| || | |||||| || || | Sbjct 3991 CTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTA 3932 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 |||||||||||||| |||||| Sbjct 3931 AGGTTTTTACAAAAATTTGCATG 3909 >seq65209 Length=1292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| |||| || ||||| || || || ||||||||||||||||| |||||| Sbjct 959 TACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTTG 1018 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || | | ||||| ||||||| | || || |||| || | || |||||||| | Sbjct 1019 CCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTGCCGGTGA 1078 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 |||| || || ||||| ||||| Sbjct 1079 GAGTCTTCACGAAAATTTGCAT 1100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419476937060412