Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 145 2e-29
seq73431 122 2e-22
seq27460 107 5e-18
seq14519 107 5e-18
seq97776 104 5e-17
seq76917 95.1 3e-14
>seq29780
Length=3062
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| |||||||| | || ||||| || || ||||| || |
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| | || || || || || || | ||||| ||| ||||||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGA---TCTGGG 122
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| |||||||| ||||| || |||||||| || | ||| || |||
Sbjct 123 GGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCC 182
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | |||||||||||||| |||| ||| |||||||| || |||||
Sbjct 183 ACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || |||||||| ||| | || || ||||| || ||||| || |||||
Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | ||| || || ||||| || ||||| || || |||||||||
Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || || ||||||||
Sbjct 628 GTTTTAACAAAAATCTGCAT 647
>seq73431
Length=1108
Score = 122 bits (134), Expect = 2e-22
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGC 288305
|||| ||| | | ||| |||||||| | || | |||| | |||| ||||| || |
Sbjct 340 CCACTGCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCT-GGATGTTATAATCCGA 398
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| ||||| |||||||| || || || || || || || | | ||| ||| |||||
Sbjct 399 TAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGA---TCTGG 455
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || |||||||| | |||||| ||||| || ||| |||| || | ||| || |||
Sbjct 456 GGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTC 515
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | |||||||||||||| |||| ||| |||||||| || |||||
Sbjct 516 CACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566
>seq27460
Length=3287
Score = 107 bits (118), Expect = 5e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| ||||| ||||||||||| || ||| ||||| ||||| || ||||| |||||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
| ||||| ||||| || | ||| ||||| || || |||||||||||||| |||||
Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353
Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| || |||||
Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377
>seq14519
Length=5345
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396
|| ||||| || ||||| ||| ||| || || || || ||||| || |||||||||
Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557
Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| ||||| || | ||| || ||| ||||| |||||||| || || || |||| ||||
Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497
Query 288457 TTGACGAATATCTGCAT 288473
|||||||||||||||||
Sbjct 4496 TTGACGAATATCTGCAT 4480
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| |||||||||||| ||||||||| || ||||| || || |||||
Sbjct 2645 CCAGCGAAGATGAGACGCTGTTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCC 2586
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||| | || ||||| || |||||||| || ||||| |||
Sbjct 2585 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTACCGGTGAGA 2526
Query 288454 GT 288455
||
Sbjct 2525 GT 2524
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || ||||| || ||||| ||| ||| || || || || ||||| || ||||||
Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||| | || ||||| ||||| || || || || ||||||
Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969
Score = 84.2 bits (92), Expect = 5e-11
Identities = 110/150 (73%), Gaps = 12/150 (8%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387
|| || ||||| || || ||||| ||| ||||| || || || |||||||||||
Sbjct 942 TTACCGGCGAAAATGAGGCGCTGCTGA---TCTGGCGGTATGCCCTCCTTATCCTGGATC 886
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTC 288444
||||| ||||| || || |||| ||| |||| || || ||||| || || |||||
Sbjct 885 TTCGCCTTCACATTCTCAATAGTATC---CGATGCCTCCACCTCGAGAGTAATTGTCTTG 829
Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || || || ||||| |||||||||
Sbjct 828 CCAGTGAGCGTTTTCACGAAAATCTGCATT 799
>seq97776
Length=741
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||| || ||||| ||| ||| || || || || ||||| || ||||||
Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | || || ||| ||||| |||||||| || || || ||||||
Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 48 GTCTTCACGAAGATCTGCAT 29
>seq76917
Length=1040
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||| || ||||| ||| ||| ||||| || || || || || || ||
Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | ||| || || ||||| || ||||| ||||| || || |||
Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 626 GTCTTCACGAAGATCTGCAT 607
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||| || || || ||| ||| || |||||||| ||||| || |||||
Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | || | || || || || ||||| || || ||||||| |
Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 287 GTCTTCACGAAGATCTGCAT 268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177713705940878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |