Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq29780 145 2e-29 seq73431 122 2e-22 seq27460 107 5e-18 seq14519 107 5e-18 seq97776 104 5e-17 seq76917 95.1 3e-14 >seq29780 Length=3062 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| |||||||| | || ||||| || || ||||| || | Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || || || | ||||| ||| |||||| Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGA---TCTGGG 122 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| |||||||| ||||| || |||||||| || | ||| || ||| Sbjct 123 GGGATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCC 182 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||||||||||| |||| ||| |||||||| || ||||| Sbjct 183 ACTTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || |||||||| ||| | || || ||||| || ||||| || ||||| Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| || || ||||| || ||||| || || ||||||||| Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || |||||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq73431 Length=1108 Score = 122 bits (134), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGC 288305 |||| ||| | | ||| |||||||| | || | |||| | |||| ||||| || | Sbjct 340 CCACTGCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCT-GGATGTTATAATCCGA 398 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| || || || || || || || | | ||| ||| ||||| Sbjct 399 TAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGA---TCTGG 455 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || |||||||| | |||||| ||||| || ||| |||| || | ||| || ||| Sbjct 456 GGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTC 515 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||||||||||| |||| ||| |||||||| || ||||| Sbjct 516 CACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq27460 Length=3287 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| ||||| ||||||||||| || ||| ||||| ||||| || ||||| ||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | ||||| ||||| || | ||| ||||| || || |||||||||||||| ||||| Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| Sbjct 2354 TAGCGTCTTCACGAAGATTTGCAT 2377 >seq14519 Length=5345 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || ||||| || ||||| ||| ||| || || || || ||||| || ||||||||| Sbjct 4616 GCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCTTTC 4557 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| || | ||| || ||| ||||| |||||||| || || || |||| |||| Sbjct 4556 ACATTTTCGATGGTATCTGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAAAGTC 4497 Query 288457 TTGACGAATATCTGCAT 288473 ||||||||||||||||| Sbjct 4496 TTGACGAATATCTGCAT 4480 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||||||| ||||||||| || ||||| || || ||||| Sbjct 2645 CCAGCGAAGATGAGACGCTGTTGATCTGGTGGGATTCCCTCCTTATCTTGTATCTTCGCC 2586 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || ||||| || |||||||| || ||||| ||| Sbjct 2585 TTCACATTCTCGATGGTATCCGAGGCCTCCACTTCCAGAGTGATCGTTTTACCGGTGAGA 2526 Query 288454 GT 288455 || Sbjct 2525 GT 2524 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| ||| ||| || || || || ||||| || |||||| Sbjct 5108 CCAGCAAAGATAAGCCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 5049 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || ||||| ||||| || || || || |||||| Sbjct 5048 TTCACATTCTCGATGGTATCTGATGCCTCGACTTCCAGCGTAATGGTTTTGCCAGTCAGA 4989 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 4988 GTCTTCACGAAGATCTGCAT 4969 Score = 84.2 bits (92), Expect = 5e-11 Identities = 110/150 (73%), Gaps = 12/150 (8%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || ||||| || || ||||| ||| ||||| || || || ||||||||||| Sbjct 942 TTACCGGCGAAAATGAGGCGCTGCTGA---TCTGGCGGTATGCCCTCCTTATCCTGGATC 886 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || || |||| ||| |||| || || ||||| || || ||||| Sbjct 885 TTCGCCTTCACATTCTCAATAGTATC---CGATGCCTCCACCTCGAGAGTAATTGTCTTG 829 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| ||||||||| Sbjct 828 CCAGTGAGCGTTTTCACGAAAATCTGCATT 799 >seq97776 Length=741 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || ||||| ||| ||| || || || || ||||| || |||||| Sbjct 168 CCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCGCT 109 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | || || ||| ||||| |||||||| || || || |||||| Sbjct 108 TTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCAGA 49 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 48 GTCTTCACGAAGATCTGCAT 29 >seq76917 Length=1040 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || ||||| ||| ||| ||||| || || || || || || || Sbjct 746 CCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCC 687 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| || || ||||| || ||||| ||||| || || ||| Sbjct 686 TTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTAGA 627 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 626 GTCTTCACGAAGATCTGCAT 607 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || || || ||| ||| || |||||||| ||||| || ||||| Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | || | || || || || ||||| || || ||||||| | Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 287 GTCTTCACGAAGATCTGCAT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177713705940878