Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1597 87.8 2e-12 seq73987 86.0 7e-12 seq14620 86.0 7e-12 seq14493 86.0 7e-12 seq2467 86.0 7e-12 >seq1597 Length=15151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 6331 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 6272 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 6271 TACTACCGAGGAT 6259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7937 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7878 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 7877 TACTACCGAGGA 7866 >seq73987 Length=1096 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| |||| | |||||||||| |||||| | ||||||||||| |||||||||| Sbjct 792 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCA 851 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 852 CTATACTACCGAGGA 866 >seq14620 Length=5323 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 1842 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 1783 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 1782 TACTACCGAGGA 1771 >seq14493 Length=5350 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4466 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4525 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 4526 TACTACCGAGGA 4537 >seq2467 Length=12765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 351 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 292 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 291 TACTACCGAGGA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542340936665840