Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq29780 143 3e-29 seq65209 136 4e-27 seq73431 113 4e-20 seq32511 84.2 2e-11 seq30912 82.4 8e-11 >seq29780 Length=3062 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || ||||| | ||||| ||||| || ||||| ||||| | Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| ||||||||||||||| |||| | |||||||| || || || Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || || || ||| || || | ||||| || |||||| Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || ||||||||||| |||||||||||||| Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232 >seq65209 Length=1292 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || ||||| | |||||||| ||||| ||||| ||||| | Sbjct 460 ACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGA 519 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || | ||||||||||||| |||| || || ||||| || ||||| Sbjct 520 CAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGG 579 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || || || ||| || ||| | || || || ||||| Sbjct 580 GATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||||| ||||| ||||| |||||||| ||||| Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq73431 Length=1108 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 64222 GCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGT 64281 ||| || | ||| || ||||| | ||||| | | || ||||| ||||| | | || Sbjct 345 GCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGT 404 Query 64282 GCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCC 64341 ||| ||||||| | ||||||||| ||| |||| | | |||||| || || || || || Sbjct 405 GCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCC 464 Query 64342 TTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTAC 64401 |||||| | || || || ||| || || | ||||| || |||||||| | Sbjct 465 TTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAA 524 Query 64402 AGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||||| || ||||||||||| |||||||||||||| Sbjct 525 AGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566 >seq32511 Length=2827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| ||||| ||||| |||| | | ||||| |||| || | |||||||||| Sbjct 1162 GTCGATTCCTTTTGGATGTTAAAATCCGATAAAGTGCGATCGTCCTCCAACTGCTTGCCG 1221 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| |||| || || |||||||| ||| | || |||||||| Sbjct 1222 GCAAAAATTAGACGTTGCTGGTCCGGAAGGATACCTTCTTT 1262 >seq30912 Length=2956 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 ||||| | | ||| || ||||| | |||||||| ||||| || || |||| | | Sbjct 1114 CCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATATTAAAATCCGATAAA 1173 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| |||| || | ||||||||||||| |||| || | |||||||| ||| | || Sbjct 1174 GTGCGATCGTCCTCCAACTGCTTGCCGGCAAAAATTAGATGTTGCTGGTCCGGAAGGATA 1233 Query 64340 CCTTCTTT 64347 |||||||| Sbjct 1234 CCTTCTTT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498842863850440