Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 143 3e-29
seq65209 136 4e-27
seq73431 113 4e-20
seq32511 84.2 2e-11
seq30912 82.4 8e-11
>seq29780
Length=3062
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | | ||| || ||||| | ||||| ||||| || ||||| ||||| |
Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| ||||||| ||||||||||||||| |||| | |||||||| || || ||
Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| || || | ||||| || ||||||
Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACT 185
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | ||||| || ||||||||||| ||||||||||||||
Sbjct 186 TCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCAT 232
>seq65209
Length=1292
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||| || ||||| | |||||||| ||||| ||||| ||||| |
Sbjct 460 ACCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGA 519
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| |||| || | ||||||||||||| |||| || || ||||| || |||||
Sbjct 520 CAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGG 579
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || ||||| || || || || ||| || ||| | || || || |||||
Sbjct 580 GATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | |||||||| ||||| ||||| |||||||| |||||
Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
>seq73431
Length=1108
Score = 113 bits (124), Expect = 4e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 64222 GCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGT 64281
||| || | ||| || ||||| | ||||| | | || ||||| ||||| | | ||
Sbjct 345 GCGAAAGCGAAGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGT 404
Query 64282 GCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCC 64341
||| ||||||| | ||||||||| ||| |||| | | |||||| || || || || ||
Sbjct 405 GCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCC 464
Query 64342 TTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTAC 64401
|||||| | || || || ||| || || | ||||| || |||||||| |
Sbjct 465 TTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAA 524
Query 64402 AGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||||| || ||||||||||| ||||||||||||||
Sbjct 525 AGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATTTGCAT 566
>seq32511
Length=2827
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|||||||| ||||| ||||| |||| | | ||||| |||| || | ||||||||||
Sbjct 1162 GTCGATTCCTTTTGGATGTTAAAATCCGATAAAGTGCGATCGTCCTCCAACTGCTTGCCG 1221
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||| |||| || || |||||||| ||| | || ||||||||
Sbjct 1222 GCAAAAATTAGACGTTGCTGGTCCGGAAGGATACCTTCTTT 1262
>seq30912
Length=2956
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279
||||| | | ||| || ||||| | |||||||| ||||| || || |||| | |
Sbjct 1114 CCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATATTAAAATCCGATAAA 1173
Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339
||||| |||| || | ||||||||||||| |||| || | |||||||| ||| | ||
Sbjct 1174 GTGCGATCGTCCTCCAACTGCTTGCCGGCAAAAATTAGATGTTGCTGGTCCGGAAGGATA 1233
Query 64340 CCTTCTTT 64347
||||||||
Sbjct 1234 CCTTCTTT 1241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498842863850440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |