Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq65209 84.2 2e-11 seq14519 84.2 2e-11 seq29780 82.4 8e-11 >seq65209 Length=1292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||| || || || ||| || |||||| | || || |||| | Sbjct 494 GATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCA 553 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || ||||| || || |||||||| ||||| |||||||| ||| || || | Sbjct 554 AAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTTAACG 613 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | |||||| || | || | || || || |||| ||||| Sbjct 614 TTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTG 673 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 674 ACGAAAATCTGCAT 687 >seq14519 Length=5345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 138474 ACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG 138533 ||| | | |||| || ||||| || |||||||| || || |||||||| ||| |||| | Sbjct 4050 ACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCC-TGAATTTTCG 3992 Query 138534 TTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||||| | ||| | || || | | ||| ||||| | || | ||||||||| || | Sbjct 3991 CTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTA 3932 Query 138593 GAGTTTTTACAAAAATCTGCATG 138615 |||||||||||||| |||||| Sbjct 3931 AGGTTTTTACAAAAATTTGCATG 3909 >seq29780 Length=3062 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTG 138542 || |||||||| || || ||||| || ||||| ||||| ||| | || | |||| | Sbjct 517 ATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGCCTTTACGTT 575 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| || |||||| || | || | ||||| || ||||||||||| || Sbjct 576 CTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGAGTTTTAAC 635 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 636 AAAAATCTGCAT 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495465892644720