Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq65209 84.2 2e-11
seq14519 84.2 2e-11
seq29780 82.4 8e-11
>seq65209
Length=1292
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| ||||| || || || ||| || |||||| | || || |||| |
Sbjct 494 GATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCCAACTGCTTGCCGGCA 553
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || ||||| || || |||||||| ||||| |||||||| ||| || || |
Sbjct 554 AAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTCGCCTTAACG 613
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | |||||| || | || | || || || |||| |||||
Sbjct 614 TTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTG 673
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 674 ACGAAAATCTGCAT 687
>seq14519
Length=5345
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 138474 ACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG 138533
||| | | |||| || ||||| || |||||||| || || |||||||| ||| |||| |
Sbjct 4050 ACCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCC-TGAATTTTCG 3992
Query 138534 TTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
||||| | ||| | || || | | ||| ||||| | || | ||||||||| || |
Sbjct 3991 CTTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTA 3932
Query 138593 GAGTTTTTACAAAAATCTGCATG 138615
|||||||||||||| ||||||
Sbjct 3931 AGGTTTTTACAAAAATTTGCATG 3909
>seq29780
Length=3062
Score = 82.4 bits (90), Expect = 8e-11
Identities = 99/132 (75%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTG 138542
|| |||||||| || || ||||| || ||||| ||||| ||| | || | |||| |
Sbjct 517 ATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGCCTTTACGTT 575
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||||| || |||||| || | || | ||||| || ||||||||||| ||
Sbjct 576 CTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGAGTTTTAAC 635
Query 138603 AAAAATCTGCAT 138614
||||||||||||
Sbjct 636 AAAAATCTGCAT 647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495465892644720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |