Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq29780 104 2e-17 seq65209 89.7 5e-13 >seq29780 Length=3062 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || |||||||| || || || ||||| Sbjct 6 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGAT 65 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | || || ||||||||||| || || Sbjct 66 AGAGTGCGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGG 125 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTC-TCGAC 127065 ||||| || |||||| ||| ||| ||||| | ||||| || |||| || | || || Sbjct 126 ATGCCTTCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCG-ACGCTTCCAC 184 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | ||| || || |||| |||||| || ||||| |||||| Sbjct 185 TTCCAAAGTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTGCATG 233 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| | || | ||||||||||| ||||| ||||| ||||||||| || ||| | Sbjct 508 CCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCC 567 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| ||||| | ||| ||||| | || | ||||||||||||||| Sbjct 568 TTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGA 627 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| |||||||||||||| Sbjct 628 GTTTTAACAAAAATCTGCAT 647 >seq65209 Length=1292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || || || ||||| || || ||||| | Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || || || | || | || |||||||| ||||| Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| |||||| ||| ||| ||| | | || | |||||||| ||| ||| Sbjct 581 ATACCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACT 640 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||||| || ||||||||||| Sbjct 641 TCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474737615272240