Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq27460 95.1 1e-14
seq65209 89.7 5e-13
seq29780 89.7 5e-13
seq14519 82.4 7e-11
>seq27460
Length=3287
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||| ||||| | |||| |||||||| |||||||| |||||||| || || ||||||||
Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
| || | ||| | ||| || || || || || || || || | ||| ||||||||
Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353
Query 45317 TAGAGTTTTTACAAAAATTTGCATCGC 45343
||| || || || || |||||||| ||
Sbjct 2354 TAGCGTCTTCACGAAGATTTGCATGGC 2380
>seq65209
Length=1292
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || ||||||| || |||||||||||||| ||||||||
Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | || ||||| || || || || | || | |||||||| ||||| ||
Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || ||||| || || | | || | | | || | || | |||||| || | ||| ||
Sbjct 581 ATACCCTCTTTGTCCTGGA-TCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| | || ||||| || | ||||| || ||||| |||||
Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
>seq29780
Length=3062
Score = 89.7 bits (98), Expect = 5e-13
Identities = 97/126 (77%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274
|| ||||| || || ||||||||||| || || ||||| || || | || | || |
Sbjct 523 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTTA-CGTTCTCGAT 581
Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334
|||||||| | ||| ||||| ||||| | ||||||||||| |||||||| ||||||||
Sbjct 582 CGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGAGTTTTAACAAAAAT 641
Query 45335 TTGCAT 45340
|||||
Sbjct 642 CTGCAT 647
>seq14519
Length=5345
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275
|| ||||| ||||| || ||||| ||||| || |||||||| ||| | ||| |
Sbjct 4034 CGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCTTTAACATTTTCAATC 3975
Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335
|| || || | ||| || || | ||| | |||||| || |||| |||||||||||||||
Sbjct 3974 GTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAGGTTTTTACAAAAATT 3915
Query 45336 TGCAT 45340
|||||
Sbjct 3914 TGCAT 3910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451277729213960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |