Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq27460 95.1 1e-14 seq65209 89.7 5e-13 seq29780 89.7 5e-13 seq14519 82.4 7e-11 >seq27460 Length=3287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||| | |||| |||||||| |||||||| |||||||| || || |||||||| Sbjct 2234 TTTACCTGCAAAGATCAGACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCCTGAATTTT 2293 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | || | ||| | ||| || || || || || || || || | ||| |||||||| Sbjct 2294 TGTCTTCACATTTTCGATGGTATCCGAGGATTCCACCTCAAGCGTGATCGTCTTGCCGGT 2353 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGC 45343 ||| || || || || |||||||| || Sbjct 2354 TAGCGTCTTCACGAAGATTTGCATGGC 2380 >seq65209 Length=1292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || ||||||| || |||||||||||||| |||||||| Sbjct 461 CCACCGCGAAGGCGAAGGACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGAC 520 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || ||||| || || || || | || | |||||||| ||||| || Sbjct 521 AAAGTGCGACCGTCCTCCAACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGG 580 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || ||||| || || | | || | | | || | || | |||||| || | ||| || Sbjct 581 ATACCCTCTTTGTCCTGGA-TCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCAC 639 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | || ||||| || | ||||| || ||||| ||||| Sbjct 640 TTCCAGAGTGATTGTCTTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq29780 Length=3062 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 || ||||| || || ||||||||||| || || ||||| || || | || | || | Sbjct 523 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTTA-CGTTCTCGAT 581 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||||| | ||| ||||| ||||| | ||||||||||| |||||||| |||||||| Sbjct 582 CGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCGGTCAGAGTTTTAACAAAAAT 641 Query 45335 TTGCAT 45340 ||||| Sbjct 642 CTGCAT 647 >seq14519 Length=5345 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| || ||||| ||||| || |||||||| ||| | ||| | Sbjct 4034 CGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAATTTTCGCTTTAACATTTTCAATC 3975 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||| || || | ||| | |||||| || |||| ||||||||||||||| Sbjct 3974 GTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAAGGTTTTTACAAAAATT 3915 Query 45336 TGCAT 45340 ||||| Sbjct 3914 TGCAT 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451277729213960