Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq29780 127 5e-24 seq73431 93.3 1e-13 seq14519 89.7 1e-12 seq76917 86.0 1e-11 >seq29780 Length=3062 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || | ||||||||| || || | ||| || || | | ||| Sbjct 12 CGAAGGCGAAGGACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTG 71 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| ||||| || || | |||||||| || || || ||| Sbjct 72 CGACCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCT 131 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||| ||| ||||| || || | | ||| || ||||| Sbjct 132 TCTTTGTCCTGGATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAA 191 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | |||||| || |||||||| Sbjct 192 GTGATCGTCTTCCCCGTCAAAGTTTTGACGAAAATTTG 229 >seq73431 Length=1108 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || | ||||||| || |||| ||| || || | | ||| | || ||| Sbjct 355 AGGACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCT 414 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || || || | | |||||| || || || |||||| | | Sbjct 415 TCCAACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGC 474 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| || || | | ||| || || || ||||||||| Sbjct 475 TGGATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTC 534 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||| || |||||||| Sbjct 535 TTCCCTGTCAAAGTTTTGACGAAAATTTG 563 >seq14519 Length=5345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || |||||||| |||||||| |||||| || || ||| |||||||| ||| || Sbjct 4049 CCAGCAAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCTTTGTCCTGAAT-TTTCGC 3991 Query 199550 TTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 || | | ||| | || || | || ||||| ||||| |||||||| |||||||| | Sbjct 3990 TTTAACATTTTCAATCGTATCCGATGCCTCTACCTCCAAAGTGATCGTTTTACCCGTTAA 3931 Query 199609 AGTTTTCACAAAAATTTG 199626 ||||| ||||||||||| Sbjct 3930 GGTTTTTACAAAAATTTG 3913 >seq76917 Length=1040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| || || ||||| ||||| ||| |||||| ||||||||||| | Sbjct 407 CCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCGCC 348 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | || || || |||| ||||| || ||||| || | | Sbjct 347 TTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCAAA 288 Query 199610 GTTTTCACAAAAATTTG 199626 || ||||| || || || Sbjct 287 GTCTTCACGAAGATCTG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176982111497867