Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq29780 129 7e-25
seq65209 109 6e-19
seq73431 98.7 1e-15
>seq29780
Length=3062
Score = 129 bits (142), Expect = 7e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| |||||||| || ||| || || || || || || ||||||||||| |||| ||
Sbjct 24 ACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCC 83
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||||||||| || || ||||||||||| || | || | || || |||||| |
Sbjct 84 AGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGG 143
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | ||| || || |||||| |||| ||||| || ||
Sbjct 144 ATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTC 203
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||| ||||| || || ||||||||
Sbjct 204 CCCGTCAAAGTTTTGACGAAAATTTGCAT 232
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507
||| | || ||||| || | |||||||| || | || | || ||||||||| |||
Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561
Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567
||| ||| | || | | ||||||| || ||||| |||| ||||| ||||||||
Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621
Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| ||||||||||| || |||||
Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647
>seq65209
Length=1292
Score = 109 bits (120), Expect = 6e-19
Identities = 152/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| |||||||| || ||||||||||| || || || || | |||||| |||| ||
Sbjct 479 ACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCC 538
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| |||||||||||| || || | || ||||| || | || | | ||| |||||| |
Sbjct 539 AACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGG 598
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTT 46561
|||||| ||| | || | | ||||| |||| ||||| |||| ||||| ||
Sbjct 599 ATCTTCGCCTTAACGTTCTCAATGGTGTC---CGATGCCTCCACTTCCAGAGTGATTGTC 655
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||||| |||||| || || || |||||
Sbjct 656 TTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687
>seq73431
Length=1108
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| || || || || ||||| || || || ||||||||||| |||| ||
Sbjct 358 ACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCC 417
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| || || || |||| |||||| || | || | || || |||| | |
Sbjct 418 AACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGG 477
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | ||| || || |||||| || | ||||| || ||
Sbjct 478 ATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTC 537
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| || || ||||||||
Sbjct 538 CCTGTCAAAGTTTTGACGAAAATTTGCAT 566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564331185302520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |