Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq29780 129 7e-25 seq65209 109 6e-19 seq73431 98.7 1e-15 >seq29780 Length=3062 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || ||| || || || || || || ||||||||||| |||| || Sbjct 24 ACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCC 83 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || || ||||||||||| || | || | || || |||||| | Sbjct 84 AGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGG 143 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| | | | ||| || || |||||| |||| ||||| || || Sbjct 144 ATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTC 203 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || || |||||||| Sbjct 204 CCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||| | || ||||| || | |||||||| || | || | || ||||||||| ||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| ||| | || | | ||||||| || ||||| |||| ||||| |||||||| Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||||||||| || ||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 >seq65209 Length=1292 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || ||||||||||| || || || || | |||||| |||| || Sbjct 479 ACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCC 538 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||||||| || || | || ||||| || | || | | ||| |||||| | Sbjct 539 AACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGG 598 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTT 46561 |||||| ||| | || | | ||||| |||| ||||| |||| ||||| || Sbjct 599 ATCTTCGCCTTAACGTTCTCAATGGTGTC---CGATGCCTCCACTTCCAGAGTGATTGTC 655 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| |||||| || || || ||||| Sbjct 656 TTGCCCGTCAACGTTTTGACGAAAATCTGCAT 687 >seq73431 Length=1108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| || || || || ||||| || || || ||||||||||| |||| || Sbjct 358 ACGAGATGTAAGGTCGACTTCTCCTGGATGTTATAATCCGATAGAGTGCGACCGTCTTCC 417 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||| || || || |||| |||||| || | || | || || |||| | | Sbjct 418 AACTGCTTGCCAGCAAAAATTAAGCTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGG 477 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| | | | ||| || || |||||| || | ||||| || || Sbjct 478 ATCTTCGCCTTGACGCTTTCGATCGTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTC 537 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || |||||||| Sbjct 538 CCTGTCAAAGTTTTGACGAAAATTTGCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564331185302520