Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq55198 123 1e-22 seq1065 96.9 1e-14 seq23395 84.2 9e-11 >seq55198 Length=1598 Score = 123 bits (136), Expect = 1e-22 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| ||||| || |||||||||||| | |||||| | || |||||||| |||| ||| Sbjct 1248 AAAACGTTTGCCCCGGAAGAAATTTCAGCGATGGTTTTAACGAAAATGAAGGAAATCGCA 1307 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 || ||||||||| || | || || || || || || ||||| || | | Sbjct 1308 GAGGCATATATTGGGAAAAAGGTGGAACACGCTGTGATCACAGTGCCGGCTTACTTTACT 1367 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||| |||||||| || || || ||||| ||| || || || |||||||| | || Sbjct 1368 GATGCGCAACGGCAGGCTACGAAGGATGCTGGAACGATCGCCGGCCTAAATGTTGTCCGT 1427 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || ||||| || || || ||| | || ||||| |||| Sbjct 1428 ATTATCAACGAACCAACGGCCGCCGCTATCGCTTATGGTCTAG 1470 >seq1065 Length=17194 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || | || || || || |||||||||||| | || ||||| ||||| |||||| Sbjct 1474 GATGCGGTGGTCACGGTGCCGGCATATTTCAATGATTCCCAGCGGCAGGCAACGAAAGAT 1533 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||||| || ||||||| || |||||||| ||||| || || || ||||| Sbjct 1534 GCTGGCGCAATTGCGGGCCTAAATGTGCTGCGAATTATAAATGAGCCAACTGCTGCTGCA 1593 Query 451439 CTAGCATATGG 451449 | |||||||| Sbjct 1594 ATTGCATATGG 1604 >seq23395 Length=3764 Score = 84.2 bits (92), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| ||||| |||||||| Sbjct 6 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGA 63 Query 509566 GTCCCACATAAGGCT 509580 ||||| || | |||| Sbjct 64 GTCCCGCAGAGGGCT 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1972468070953308