Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1065 109 4e-18 seq4775 95.1 9e-14 seq55198 87.8 1e-11 >seq1065 Length=17194 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | |||||| |||| |||||||||||||| ||||| ||||||| || ||| Sbjct 1616 TTTTTATCCAAACCATATGCAATTGCAGCAGCAGTTGGCTCATTTATAATTCGCAGCACA 1557 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || |||||| || |||||||| || || || | || ||||| || |||||| Sbjct 1556 TTTAGGCCCGCAATTGCGCCAGCATCTTTCGTTGCCTGCCGCTGGGAATCATTGAAATAT 1497 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || || || | || ||||| Sbjct 1496 GCCGGCACCGTGACCACCGCATC 1474 >seq4775 Length=9739 Score = 95.1 bits (104), Expect = 9e-14 Identities = 175/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 |||| |||||||||| | ||||||| || ||| | || |||||| ||| ||| Sbjct 735 ACTTCGAATGGCCAGTGCTCCATATCTTTTTTCACAGTGGTATCGTTAAAACCTCGGCCA 794 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC-AGCTTGATATTTGGC 518565 || || ||||| ||||| || | ||||| | ||||| | | |||| | | |||||| Sbjct 795 ATCAAACGTTTCGCATCGAATACGGTATTTTTCGGATTTGTGGTGAGCTGGTT-TTTGGC 853 Query 518566 TGCATCTCCAATCAGATGTT---CTGTCTCTGTA---AATGAAACATATGATGGAGTTGT 518619 |||||| ||||||||| | | | | ||| || || | || || ||||| || | Sbjct 854 TGCATCACCAATCAGACGCTCACCAGACTCACTACTGAACGCCACGTACGATGGTGTGAT 913 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 ||||| || || ||||| || |||||||| || ||||||| | | ||| ||||| Sbjct 914 ACGATTGCCCTGTTCATTGGCGATAATTTCCACACGTCCATTTTTATAGATACCAACACA 973 Query 518680 ACT---AAAAGT 518688 ||| |||||| Sbjct 974 ACTGTAAAAAGT 985 >seq55198 Length=1598 Score = 87.8 bits (96), Expect = 1e-11 Identities = 171/249 (69%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 |||| |||||||||| | ||| ||| || ||| | || |||||| ||| ||| Sbjct 869 ACTTCGAATGGCCAGTGCTCCATGTCTTTTTTCACAGTGGTATCGTTAAAACCTCGGCCA 810 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC-AGCTTGATATTTGGC 518565 || || || || ||||| |||| ||||| | ||||| | | |||| | | |||||| Sbjct 809 ATCAAACGCTTCGCATCGAAAACGGTATTTTTCGGATTTGTGGTGAGCTGGTT-TTTGGC 751 Query 518566 TGCATCTCCAATCAGATGTT---CTGTCTCTGTA---AATGAAACATATGATGGAGTTGT 518619 |||||| ||||||||| | | | | ||| || || | || || || || || | Sbjct 750 TGCATCACCAATCAGACGCTCACCAGACTCACTACTGAACGCCACGTACGACGGTGTGAT 691 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 ||||| || || ||||| || |||||||| || ||||||| | | ||| ||||| Sbjct 690 TCGATTGCCCTGTTCATTGGCGATAATTTCCACACGTCCATTTTTATAGATACCAACACA 631 Query 518680 ACTAAAAGT 518688 ||| |||| Sbjct 630 ACTGCAAGT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3774450719427106