Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25]
128,401 sequences; 322,334,493 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq4775 159 4e-34
seq55198 150 2e-31
seq1065 120 4e-22
seq39380 87.8 2e-12
seq43397 86.0 8e-12
seq41836 86.0 8e-12
>seq4775
Length=9739
Score = 159 bits (176), Expect = 4e-34
Identities = 174/230 (76%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|| ||||| ||||| || |||||||| || ||||||||||| || |||||||| | | |
Sbjct 122 TTTTTATCTAGACCATAAGCGATAGCGGCGGCCGTTGGTTCGTTGATAATACGGACAACG 181
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||| || || ||| | ||||| ||||| || || ||||||| ||| |||||||
Sbjct 182 TTTAGGCCGGCGATCGTTCCAGCATCCTTCGTAGCCTGCCGTTGCGCATCAGTAAAGTAT 241
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
||||| || || | || |||| || ||||| |||| ||| | ||| ||||| ||
Sbjct 242 GCCGGCACTGTGATCACGGCGTGTTCCACCTTCTTCCCGATATATGCTTCTGCGATTTCC 301
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824
|||||||| || | ||||||| |||||| || || | |||||| ||||
Sbjct 302 TTCATTTTCGTTAAGACCATCGCTGAAATTTCCTCCGGGGCAAAC-GTTT 350
>seq55198
Length=1598
Score = 150 bits (166), Expect = 2e-31
Identities = 172/230 (75%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|| ||||| ||||| || |||||||| || ||||||||||| || |||||||| | |
Sbjct 1477 TTTTTATCTAGACCATAAGCGATAGCGGCGGCCGTTGGTTCGTTGATAATACGGACAACA 1418
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||| || || ||| | ||||| ||||| || || ||||||| ||| |||||||
Sbjct 1417 TTTAGGCCGGCGATCGTTCCAGCATCCTTCGTAGCCTGCCGTTGCGCATCAGTAAAGTAA 1358
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
||||| || || | || |||| || || || || | ||| | || ||||| ||
Sbjct 1357 GCCGGCACTGTGATCACAGCGTGTTCCACCTTTTTCCCAATATATGCCTCTGCGATTTCC 1298
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824
|||||||| || | |||||||| |||||| ||||| | |||||| ||||
Sbjct 1297 TTCATTTTCGTTAAAACCATCGCTGAAATTTCTTCCGGGGCAAAC-GTTT 1249
>seq1065
Length=17194
Score = 120 bits (132), Expect = 4e-22
Identities = 186/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| || | || ||||| || || || || ||||| ||| || || || |||||
Sbjct 4228 TCATCATCTGCCTTGTACTTCTCGGCTTCCTGCACCATTCGTTCGATCTCGTCCTTCGAA 4169
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| || || || || || || ||||||||||| | | || || | || ||||||||
Sbjct 4168 AGTCGGCCTTTGTCGTTTGTGATCGTAATCTTATTGTGCTTGCCGGTGGACTTATCTTGC 4109
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| | || |||| || ||||| ||||| | |||||| | || | ||| || ||| |
Sbjct 4108 GCCGTAACGTTCAGGATTCCATTGGCATCGATATCGAATGTAACCTCAATCTGCGGTACA 4049
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | ||||| | ||||| |||| | |||||| | ||||| || |||| ||| ||
Sbjct 4048 CCGCGAGGTGCCGGCGGAATGCCCGAAAGCTCAAATTTGCCAAGCAAGTTGTTGTCCTTC 3989
Query 6809 GCCTTCTTACGTTCACCTTCATAGAC 6834
| | || ||| ||||||||||| ||
Sbjct 3988 GTCATCGCACGCTCACCTTCATAAAC 3963
Score = 93.3 bits (102), Expect = 5e-14
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653
|| ||||| | ||| || || || || || || ||||| ||||| ||||| || || |||
Sbjct 1616 TTTTTATCCAAACCATATGCAATTGCAGCAGCAGTTGGCTCATTTATAATTCGCAGCACA 1557
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|| ||||| ||||| | | ||||||||||| || || || || ||||| || || ||
Sbjct 1556 TTT-AGGCCCGCAATTGCGCCAGCATCTTTCGTTGCCTGCCGCTGGGAATCATTGAAATA 1498
Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738
||||| ||||| || ||||| |||
Sbjct 1497 TGCCGGCACCGTGACCACCGCATCC 1473
>seq39380
Length=2330
Score = 87.8 bits (96), Expect = 2e-12
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 184215 CACGCACGTT-CTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACA 184273
|||| || || |||| |||| || | | ||||||||| ||||| || | |||||||||
Sbjct 1158 CACGAACATTGCTTA-ATTTGCCACGGATCGGAAAAACCCCGTAGTGTTTTCGACCAACA 1100
Query 184274 ACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTA 184333
|| | ||| ||||||| ||||||| ||| |||||||| ||||| |||| || || ||
Sbjct 1099 ACAGTAAGTCCAGCAACGGCAAGTGCTTTCGCAGAATCTCCTTCCGTAACGATCAGTGTG 1040
Query 184334 CA 184335
||
Sbjct 1039 CA 1038
>seq43397
Length=2103
Score = 86.0 bits (94), Expect = 8e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644
|||| || ||||| | | |||| |||| || ||||| || || | | |||||
Sbjct 2011 ACTTCTCGGCATCGTTAATCATCCTTTCGATATCTTCCGGAGACAACCGGTTATGATCAT 1952
Query 6645 TCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703
| || || || ||||| ||| ||| || | | ||||||||||||| | |||| ||||
Sbjct 1951 TTGTGATTGTTATCTTATTCTTATTG-CCAGTGCCCTTATCTTCAGCCGTAACATGCAAA 1893
Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763
|| ||||| |||| | ||||| | || | ||| |||||| ||| | ||||| | |
Sbjct 1892 ATGCCATTGACATCGATTTCGAATGTGACCTCAATCTGTGGTACACCACGAGGTGCTGGT 1833
Query 6764 GGAATACCCGTTAAATCAAAT 6784
|| || || || |||||||||
Sbjct 1832 GGGATGCCGGTCAAATCAAAT 1812
>seq41836
Length=2186
Score = 86.0 bits (94), Expect = 8e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644
|||| || ||||| | | |||| |||| || ||||| || || | | |||||
Sbjct 94 ACTTCTCGGCATCGTTAATCATCCTTTCGATATCTTCCGGAGACAACCGGTTATGATCAT 153
Query 6645 TCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703
| || || || ||||| ||| ||| || | | ||||||||||||| | |||| ||||
Sbjct 154 TTGTGATTGTTATCTTATTCTTATTG-CCAGTGCCCTTATCTTCAGCCGTAACATGCAAA 212
Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763
|| ||||| |||| | ||||| | || | ||| |||||| ||| | ||||| | |
Sbjct 213 ATGCCATTGACATCGATTTCGAATGTGACCTCAATCTGTGGTACACCACGAGGTGCTGGT 272
Query 6764 GGAATACCCGTTAAATCAAAT 6784
|| || || || |||||||||
Sbjct 273 GGGATGCCGGTCAAATCAAAT 293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634113403916840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |