Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4775 159 4e-34 seq55198 150 2e-31 seq1065 120 4e-22 seq39380 87.8 2e-12 seq43397 86.0 8e-12 seq41836 86.0 8e-12 >seq4775 Length=9739 Score = 159 bits (176), Expect = 4e-34 Identities = 174/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| || |||||||| || ||||||||||| || |||||||| | | | Sbjct 122 TTTTTATCTAGACCATAAGCGATAGCGGCGGCCGTTGGTTCGTTGATAATACGGACAACG 181 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| || || ||| | ||||| ||||| || || ||||||| ||| ||||||| Sbjct 182 TTTAGGCCGGCGATCGTTCCAGCATCCTTCGTAGCCTGCCGTTGCGCATCAGTAAAGTAT 241 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | || |||| || ||||| |||| ||| | ||| ||||| || Sbjct 242 GCCGGCACTGTGATCACGGCGTGTTCCACCTTCTTCCCGATATATGCTTCTGCGATTTCC 301 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 |||||||| || | ||||||| |||||| || || | |||||| |||| Sbjct 302 TTCATTTTCGTTAAGACCATCGCTGAAATTTCCTCCGGGGCAAAC-GTTT 350 >seq55198 Length=1598 Score = 150 bits (166), Expect = 2e-31 Identities = 172/230 (75%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| || |||||||| || ||||||||||| || |||||||| | | Sbjct 1477 TTTTTATCTAGACCATAAGCGATAGCGGCGGCCGTTGGTTCGTTGATAATACGGACAACA 1418 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| || || ||| | ||||| ||||| || || ||||||| ||| ||||||| Sbjct 1417 TTTAGGCCGGCGATCGTTCCAGCATCCTTCGTAGCCTGCCGTTGCGCATCAGTAAAGTAA 1358 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | || |||| || || || || | ||| | || ||||| || Sbjct 1357 GCCGGCACTGTGATCACAGCGTGTTCCACCTTTTTCCCAATATATGCCTCTGCGATTTCC 1298 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 |||||||| || | |||||||| |||||| ||||| | |||||| |||| Sbjct 1297 TTCATTTTCGTTAAAACCATCGCTGAAATTTCTTCCGGGGCAAAC-GTTT 1249 >seq1065 Length=17194 Score = 120 bits (132), Expect = 4e-22 Identities = 186/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || | || ||||| || || || || ||||| ||| || || || ||||| Sbjct 4228 TCATCATCTGCCTTGTACTTCTCGGCTTCCTGCACCATTCGTTCGATCTCGTCCTTCGAA 4169 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || || || || || || ||||||||||| | | || || | || |||||||| Sbjct 4168 AGTCGGCCTTTGTCGTTTGTGATCGTAATCTTATTGTGCTTGCCGGTGGACTTATCTTGC 4109 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || |||| || ||||| ||||| | |||||| | || | ||| || ||| | Sbjct 4108 GCCGTAACGTTCAGGATTCCATTGGCATCGATATCGAATGTAACCTCAATCTGCGGTACA 4049 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||||| | ||||| |||| | |||||| | ||||| || |||| ||| || Sbjct 4048 CCGCGAGGTGCCGGCGGAATGCCCGAAAGCTCAAATTTGCCAAGCAAGTTGTTGTCCTTC 3989 Query 6809 GCCTTCTTACGTTCACCTTCATAGAC 6834 | | || ||| ||||||||||| || Sbjct 3988 GTCATCGCACGCTCACCTTCATAAAC 3963 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || ||||| | ||| || || || || || || ||||| ||||| ||||| || || ||| Sbjct 1616 TTTTTATCCAAACCATATGCAATTGCAGCAGCAGTTGGCTCATTTATAATTCGCAGCACA 1557 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||| ||||| | | ||||||||||| || || || || ||||| || || || Sbjct 1556 TTT-AGGCCCGCAATTGCGCCAGCATCTTTCGTTGCCTGCCGCTGGGAATCATTGAAATA 1498 Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738 ||||| ||||| || ||||| ||| Sbjct 1497 TGCCGGCACCGTGACCACCGCATCC 1473 >seq39380 Length=2330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 184215 CACGCACGTT-CTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACA 184273 |||| || || |||| |||| || | | ||||||||| ||||| || | ||||||||| Sbjct 1158 CACGAACATTGCTTA-ATTTGCCACGGATCGGAAAAACCCCGTAGTGTTTTCGACCAACA 1100 Query 184274 ACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTA 184333 || | ||| ||||||| ||||||| ||| |||||||| ||||| |||| || || || Sbjct 1099 ACAGTAAGTCCAGCAACGGCAAGTGCTTTCGCAGAATCTCCTTCCGTAACGATCAGTGTG 1040 Query 184334 CA 184335 || Sbjct 1039 CA 1038 >seq43397 Length=2103 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644 |||| || ||||| | | |||| |||| || ||||| || || | | ||||| Sbjct 2011 ACTTCTCGGCATCGTTAATCATCCTTTCGATATCTTCCGGAGACAACCGGTTATGATCAT 1952 Query 6645 TCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 | || || || ||||| ||| ||| || | | ||||||||||||| | |||| |||| Sbjct 1951 TTGTGATTGTTATCTTATTCTTATTG-CCAGTGCCCTTATCTTCAGCCGTAACATGCAAA 1893 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 || ||||| |||| | ||||| | || | ||| |||||| ||| | ||||| | | Sbjct 1892 ATGCCATTGACATCGATTTCGAATGTGACCTCAATCTGTGGTACACCACGAGGTGCTGGT 1833 Query 6764 GGAATACCCGTTAAATCAAAT 6784 || || || || ||||||||| Sbjct 1832 GGGATGCCGGTCAAATCAAAT 1812 >seq41836 Length=2186 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 6585 ACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCAT 6644 |||| || ||||| | | |||| |||| || ||||| || || | | ||||| Sbjct 94 ACTTCTCGGCATCGTTAATCATCCTTTCGATATCTTCCGGAGACAACCGGTTATGATCAT 153 Query 6645 TCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 | || || || ||||| ||| ||| || | | ||||||||||||| | |||| |||| Sbjct 154 TTGTGATTGTTATCTTATTCTTATTG-CCAGTGCCCTTATCTTCAGCCGTAACATGCAAA 212 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 || ||||| |||| | ||||| | || | ||| |||||| ||| | ||||| | | Sbjct 213 ATGCCATTGACATCGATTTCGAATGTGACCTCAATCTGTGGTACACCACGAGGTGCTGGT 272 Query 6764 GGAATACCCGTTAAATCAAAT 6784 || || || || ||||||||| Sbjct 273 GGGATGCCGGTCAAATCAAAT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634113403916840