Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq29780 143 6e-29 seq65209 129 1e-24 seq73431 118 2e-21 seq76917 107 4e-18 seq97776 98.7 2e-15 seq32511 87.8 4e-12 seq30912 87.8 4e-12 seq82153 84.2 5e-11 >seq29780 Length=3062 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | ||| |||||||| || || || ||||| | ||||| | || ||||| Sbjct 24 ACGAGATGCAAAGTCGACTCTTTCTGTATGTTATAATCCGATAGAGTGCGACCGTCTTCC 83 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || | || || || ||||| || |||||||||||||| || Sbjct 84 AGCTGCTTGCCGGCAAAAATTAAGCGCTGCTGATCTGGGGGGATGCCTTCTTTGTCCTGG 143 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || || ||||| ||||||||| | || | |||||| Sbjct 144 ATCTTCGCCTTGACGTTTTCGATCGTATCCGACGCTTCCACTTCCAAAGTGATCGTCTTC 203 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| ||||| | |||||| Sbjct 204 CCCGTCAAAGTTTTGACGAAAATTTGCAT 232 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||| |||| ||||| ||||| || || || || |||||||||||||| ||||| ||||| Sbjct 502 TGCATACCAGCGAAAATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC 561 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||| |||||||| || ||||| || |||||||| || || | || || || Sbjct 562 TTCGCCTTTACGTTCTCGATCGTGTCGGACGGCTCCACTTCCAGAGTGATTGTTTTGCCG 621 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||| || || | ||||| Sbjct 622 GTCAGAGTTTTAACAAAAATCTGCAT 647 >seq65209 Length=1292 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | ||| || || ||||| || || ||||| | | ||| | || || || Sbjct 479 ACGAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCCGACAAAGTGCGACCGTCCTCC 538 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || ||||| ||||| || || ||||| || || |||||||| || Sbjct 539 AACTGCTTGCCGGCAAAAATAAGACGTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGG 598 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||||||||||||||| |||||||| || || | ||||| Sbjct 599 ATCTTCGCCTTAACGTTCTCAATGGTGTCCGATGCCTCCACTTCCAGAGTGATTGTCTTG 658 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| | ||||| Sbjct 659 CCCGTCAACGTTTTGACGAAAATCTGCAT 687 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||| |||| || ||||||||||| || || ||||| ||||||||||||||||| || Sbjct 952 AGGTGCATACCAGCAAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 1011 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| ||||| ||||| || ||||| || | || | ||||| Sbjct 1012 ATCTTTGCCTTGACGTTTTCAATCGTGTCGGACGCCTCCACCTCCAATGTGATTGTCTTG 1071 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 1072 CCGGTGAGAGTCTTCACGAAAATTTGCAT 1100 >seq73431 Length=1108 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 || || || ||||| | ||||| | || ||||| | |||||| || || || || | Sbjct 382 TGGATGTTATAATCCGATAGAGTGCGACCGTCTTCCAACTGCTTGCCAGCAAAAATTAAG 441 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 | || || ||||| || ||||||||||||| || || || ||||||| | || || Sbjct 442 CTCTGCTGATCTGGGGGGATGCCTTCTTTGTGCTGGATCTTCGCCTTGACGCTTTCGATC 501 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || ||||| ||||||||||| || | |||||| |||||||||||||| ||||| | | Sbjct 502 GTATCCGACGCTTCCACTTCAAAAGTGATCGTCTTCCCTGTCAAAGTTTTGACGAAAATT 561 Query 195136 TGCAT 195140 ||||| Sbjct 562 TGCAT 566 >seq76917 Length=1040 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||||||||| ||||| || || || ||||| ||||||||||| ||||| || Sbjct 409 TACCTGCGAAGATAAGCCGTTGCTGATCCGGTGGAATACCTTCTTTGTCCTGAATCTTCG 350 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| |||||||| |||||||| || || || || || || | || || || |||| Sbjct 349 CCTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTACCGGTCA 290 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| | ||||| Sbjct 289 AAGTCTTCACGAAGATCTGCAT 268 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||||||||| || || || || ||||| || || ||||||||||| ||| Sbjct 748 TACCTGCGAAGATAAGTCGCTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTG 689 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| |||||||| || ||||| || |||||||| || || | ||||| || || | Sbjct 688 CCTTCACGTTCTCGATCGTGTCGGACGCCTCCACTTCCAGTGTGATTGTCTTGCCAGTTA 629 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | ||||| Sbjct 628 GAGTCTTCACGAAGATCTGCAT 607 >seq97776 Length=741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||||||||| || || || ||||| ||||| || || ||||| ||||| || Sbjct 170 TACCTGCGAAGATAAGCCGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTTCG 111 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || |||||||| |||||||| || ||| ||||| || || | || || || |||| Sbjct 110 CTTTTACGTTCTCGATGGTGTCAGACGCTTCGACTTCCAGCGTGATGGTTTTGCCAGTCA 51 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | ||||| Sbjct 50 GAGTCTTCACGAAGATCTGCAT 29 >seq32511 Length=2827 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||| ||||||||||||| ||||| || || ||||| || || ||||| ||||| ||| Sbjct 1578 TACCTACGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTG 1637 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||| || ||||| || |||| || | || | || || || || | Sbjct 1638 CCTTGACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTA 1697 Query 195119 AAGTTTTTACGAA 195131 ||| || ||||| Sbjct 1698 GAGTCTTCACGAA 1710 >seq30912 Length=2956 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||||||||| ||||| || || ||||| || || ||||| ||||| ||| Sbjct 1557 TACCTGCGAAGATAAGTCGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTTG 1616 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| |||||||| || ||||| || |||| || | || | || || || || | Sbjct 1617 CCTTCACGTTCTCGATCGTGTCGGACGCCTCCATCTCCAATGTGATTGTTTTGCCAGTTA 1676 Query 195119 AAGTTTTTACGAA 195131 ||| || ||||| Sbjct 1677 GAGTCTTCACGAA 1689 >seq82153 Length=950 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || |||||||| | ||||| | ||||| | | |||| | Sbjct 159 GTCGACTCGTTCTGTATGTTGTAATCCGATAGAGTATGACTGTCTTCCAACAGCTTGCGG 218 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || |||| ||| || | |||||||||||| || || || |||| Sbjct 219 GCAAAAATTAGGTACTGCTGGTGTGGGGGGAAGCCTTCTTTGTCCTGGATCTTCGCCTTG 278 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT---TCCTGTCAAA 195120 ||| | || || || ||||| ||||||||| || || | |||||| ||| ||| | Sbjct 279 ACGCTTTCGATCGTATCCGACGCTTCCACTTCCAGAGTGATCGTCTTCCCTCCCATCACA 338 Query 195121 GTTTTTACGAACACTTGCAT 195140 |||| || || | |||||| Sbjct 339 ATTTTGACAAAAATTTGCAT 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107656349867567